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GrainGenes Marker Report: POPA1_0780

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Locus
POPA1_0780
Type
SNP
Synonym
Other name11_10780
BOPA1_11_10780
BOPA1_5541-418
Synonym11_10780
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H119.05
Hordeum-OPA123-2008-2H119.05
Hordeum-OPAConsensus-2011-2H137.03
Hordeum-OWB-OPA2008-2H142.527
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_3326
i_11_10780
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0780
[ Show all 10 ]



Probe for Locus
HAR35_3326
Locus
POPA1_0780
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10780
Locus
MLOC_10028.1
11_10780
POPA1_0780
BOPA1_5541-418
BOPA1_11_10780
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10780



Locus for Probe
MLOC_10028.1
Chromosome
2H
Map
Barley_2012_AC3_genes_2H110.907
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_10780



Locus for Probe
11_10780
Type
SNP
Synonym
Other nameBOPA1_11_10780
BOPA1_5541-418
POPA1_0780
SynonymPOPA1_0780
Species
Hordeum vulgare
Probe
i_11_10780
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_5541-418
Type
SNP
Synonym
Other name11_10780
BOPA1_11_10780
POPA1_0780
Species
Hordeum vulgare
Probe
i_11_10780
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10780
Type
SNP
Synonym
Other name11_10780
BOPA1_5541-418
POPA1_0780
Map
Barley-Core-2014_2H136.06
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10780
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.