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GrainGenes Marker Report: POPA1_0911

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Locus
POPA1_0911
Type
SNP
Synonym
Other name11_10911
BOPA1_11_10911
BOPA1_7527-1618
Synonym11_10911
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H120.51
Hordeum-OPA123-2008-1H120.51
Hordeum-OPAConsensus-2011-1H121.8
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4245
i_11_10911
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0911
[ Show all 11 ]



Probe for Locus
HAR35_4245
Locus
POPA1_0911
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10911
Locus
11_10911
POPA1_0911
BOPA1_7527-1618
BOPA1_11_10911
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10911



Locus for Probe
BOPA1_7527-1618
Type
SNP
Synonym
Other name11_10911
BOPA1_11_10911
POPA1_0911
Species
Hordeum vulgare
Probe
i_11_10911
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10911
Type
SNP
Synonym
Other name11_10911
BOPA1_7527-1618
POPA1_0911
Map
Barley-Core-2014_1H126.23
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10911
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_10911
Type
SNP
Synonym
Other nameBOPA1_11_10911
BOPA1_7527-1618
POPA1_0911
SynonymPOPA1_0911
Species
Hordeum vulgare
Probe
i_11_10911
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.