Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0935

[Submit comment/correction]

Locus
POPA1_0935
Type
SNP
Synonym
Other name11_10935
BOPA1_11_10935
BOPA1_7803-483
Synonym11_10935
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H160.08
Hordeum-OPA123-2008-3H160.08
Hordeum-OPAConsensus-2011-3H167.33
Hordeum-OWB-OPA2008-3H192.725
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_18716
i_11_10935
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0935
[ Show all 10 ]



Probe for Locus
HAR35_18716
Locus
POPA1_0935
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10935
Locus
MLOC_57075.1
11_10935
POPA1_0935
BOPA1_7803-483
BOPA1_11_10935
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10935



Locus for Probe
MLOC_57075.1
Chromosome
3H
Map
Barley_2012_AC3_genes_3H142.635
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_10935
i_12_30767



Locus for Probe
BOPA1_7803-483
Type
SNP
Synonym
Other name11_10935
BOPA1_11_10935
POPA1_0935
Species
Hordeum vulgare
Probe
i_11_10935
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10935
Type
SNP
Synonym
Other name11_10935
BOPA1_7803-483
POPA1_0935
Map
Barley-Core-2014_3H149.85
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10935
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_10935
Type
SNP
Synonym
Other nameBOPA1_11_10935
BOPA1_7803-483
POPA1_0935
Previous name11_1163
SynonymPOPA1_0935
Chromosome
U
Species
Hordeum vulgare
Probe
i_11_10935
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.