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GrainGenes Marker Report: POPA1_1171

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Locus
POPA1_1171
Type
SNP
Synonym
Other name12_11171
BOPA2_12_11171
Synonym12_11171
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H50.07
Hordeum-OPA123-2008-6H50.07
Hordeum-OPAConsensus-2011-6H53.54
Hordeum-OWB-OPA2008-6H61.96
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_986
i_12_11171
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_1171
[ Show all 12 ]



Probe for Locus
HAR35_986
Locus
POPA1_1171
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_11171
Locus
AK366640
12_11171
POPA1_1171
BOPA2_12_11171
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_11171



Locus for Probe
AK366640
Chromosome
6H
Map
Barley_2012_AC3_genes_6H52.1955
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_11171



Locus for Probe
12_11171
Type
SNP
Synonym
Other nameBOPA2_12_11171
POPA1_1171
SynonymPOPA1_1171
Species
Hordeum vulgare
Probe
i_12_11171
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_11171
Type
SNP
Synonym
Other name12_11171
POPA1_1171
Map
Barley-Core-2014_6H55.9
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_11171
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.