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GrainGenes Marker Report: POPA1_1320

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Locus
POPA1_1320
Type
SNP
Synonym
Other name11_11320
BOPA1_11_11320
BOPA1_ABC13480-1-7-313
Synonym11_11320
Chromosome
1H
3H
Chromosome Arm
3HL
Map
Hordeum-OWB-OPA2008-1H153.013
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_19636
i_11_11320
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Remark
Marker name in barley Pilot OPA1 = 1_1320
[ Show all 9 ]



Probe for Locus
HAR35_19636
Locus
POPA1_1320
POPA2_1500
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_11320
Locus
MLOC_37446.1
11_11320
POPA1_1320
BOPA1_ABC13480-1-7-313
BOPA1_11_11320
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_11320



Locus for Probe
MLOC_37446.1
Chromosome
3H
Map
Barley_2012_AC3_genes_3H155.028
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_11320



Locus for Probe
BOPA1_ABC13480-1-7-313
Type
SNP
Synonym
Other name11_11320
BOPA1_11_11320
POPA1_1320
Species
Hordeum vulgare
Probe
i_11_11320
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_11320
Type
SNP
Synonym
Other name11_11320
BOPA1_ABC13480-1-7-313
POPA1_1320
Species
Hordeum vulgare
Probe
i_11_11320
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_11320
Type
SNP
Synonym
Other nameBOPA1_11_11320
BOPA1_ABC13480-1-7-313
POPA1_1320
SynonymPOPA1_1320
Species
Hordeum vulgare
Probe
i_11_11320
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.