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GrainGenes Marker Report: POPA1_1339

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Locus
POPA1_1339
Type
SNP
Synonym
Other name12_11339
BOPA2_12_11339
Synonym12_11339
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H48.13
Hordeum-OPA123-2008-7H48.13
Hordeum-OPAConsensus-2011-7H40.48
Hordeum-OWB-OPA2008-7H46.527
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_21557
i_12_11339
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_1339
[ Show all 11 ]



Probe for Locus
HAR35_21557
Locus
POPA1_1339
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_11339
Locus
12_11339
POPA1_1339
BOPA2_12_11339
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_11339



Locus for Probe
12_11339
Type
SNP
Synonym
Other nameBOPA2_12_11339
POPA1_1339
SynonymPOPA1_1339
Species
Hordeum vulgare
Probe
i_12_11339
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_11339
Type
SNP
Synonym
Other name12_11339
POPA1_1339
Map
Barley-Core-2014_7H52.48
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_11339
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.