Query (optional)   in Class  

GrainGenes Marker Report: POPA1_1364

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA1_1364
Type
SNP
Synonym
Other name11_11364
BOPA1_11_11364
BOPA1_ABC16075-2-2-232
Synonym11_11364
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H189.6
Hordeum-OPA123-2008-5H189.6
Hordeum-OPAConsensus-2011-5H184.99
Hordeum-OWB-OPA2008-5H235.796
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_20649
i_11_11364
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_1364
[ Show all 10 ]



Probe for Locus
HAR35_20649
Locus
POPA1_1364
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_11364
Locus
11_11364
POPA1_1364
BOPA1_ABC16075-2-2-232
BOPA1_11_11364
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_11364



Locus for Probe
BOPA1_ABC16075-2-2-232
Type
SNP
Synonym
Other name11_11364
BOPA1_11_11364
POPA1_1364
Species
Hordeum vulgare
Probe
i_11_11364
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_11364
Type
SNP
Synonym
Other name11_11364
BOPA1_ABC16075-2-2-232
POPA1_1364
Map
Barley-Core-2014_5H179.67
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_11364
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_11364
Type
SNP
Synonym
Other nameBOPA1_11_11364
BOPA1_ABC16075-2-2-232
POPA1_1364
SynonymPOPA1_1364
Species
Hordeum vulgare
Probe
i_11_11364
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.