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GrainGenes Marker Report: POPA1_1436

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Locus
POPA1_1436
Type
SNP
Synonym
Other name11_11436
BOPA1_11_11436
BOPA1_ConsensusGBS0038-2
Synonym11_11436
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H139.6
Hordeum-OPA-2009-3H155.85
Hordeum-OPA123-2008-3H155.85
Hordeum-OPAConsensus-2011-3H163.49
Hordeum-OWB-OPA2008-3H187.193
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_5262
i_11_11436
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_1436
[ Show all 11 ]



Probe for Locus
HAR35_5262
Locus
POPA1_1436
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_11436
Locus
POPA1_1436
MLOC_4805.1
11_11436
BOPA1_ConsensusGBS0038-2
BOPA1_11_11436
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_11436



Locus for Probe
MLOC_4805.1
Chromosome
3H
Map
Barley_2012_AC3_genes_3H139.589
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_11436
i_SCRI_RS_201075



Locus for Probe
BOPA1_ConsensusGBS0038-2
Type
SNP
Synonym
Other name11_11436
BOPA1_11_11436
POPA1_1436
Species
Hordeum vulgare
Probe
i_11_11436
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_11436
Type
SNP
Synonym
Other name11_11436
BOPA1_ConsensusGBS0038-2
POPA1_1436
Map
Barley-Core-2014_3H145.65
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_11436
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_11436
Type
SNP
Synonym
Other nameBOPA1_11_11436
BOPA1_ConsensusGBS0038-2
POPA1_1436
SynonymPOPA1_1436
Species
Hordeum vulgare
Probe
i_11_11436
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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