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GrainGenes Marker Report: POPA1_1441

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Locus
POPA1_1441
Type
SNP
Synonym
Other name11_11441
BOPA1_11_11441
BOPA1_ConsensusGBS0086-5
Synonym11_11441
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H151.36
Hordeum-OPA123-2008-5H151.36
Hordeum-OPAConsensus-2011-5H143.29
Hordeum-OWB-OPA2008-5H179.39
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_2792
i_11_11441
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_1441
[ Show all 12 ]



Probe for Locus
HAR35_2792
Locus
POPA1_1441
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_11441
Locus
AK362891
11_11441
POPA1_1441
BOPA1_ConsensusGBS0086-5
BOPA1_11_11441
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_11441



Locus for Probe
AK362891
Chromosome
5H
Map
Barley_2012_AC3_genes_5H137.812
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_11441



Locus for Probe
BOPA1_ConsensusGBS0086-5
Type
SNP
Synonym
Other name11_11441
BOPA1_11_11441
POPA1_1441
Species
Hordeum vulgare
Probe
i_11_11441
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_11441
Type
SNP
Synonym
Other name11_11441
BOPA1_ConsensusGBS0086-5
POPA1_1441
Map
Barley-Core-2014_5H135.42
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_11441
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_11441
Type
SNP
Synonym
Other nameBOPA1_11_11441
BOPA1_ConsensusGBS0086-5
POPA1_1441
SynonymPOPA1_1441
Species
Hordeum vulgare
Probe
i_11_11441
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.