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GrainGenes Marker Report: POPA1_1527

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Locus
POPA1_1527
Type
SNP
Synonym
Other name12_11527
BOPA2_12_11527
Synonym12_11527
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H32.83
Hordeum-OPA123-2008-3H32.83
Hordeum-OPAConsensus-2011-3H34.15
Hordeum-OWB-OPA2008-3H35.124
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_8430
i_12_11527
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_1527
[ Show all 11 ]



Probe for Locus
HAR35_8430
Locus
POPA1_1527
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_11527
Locus
12_11527
POPA1_1527
BOPA2_12_11527
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_11527



Locus for Probe
12_11527
Type
SNP
Synonym
Other nameBOPA2_12_11527
POPA1_1527
SynonymPOPA1_1527
Species
Hordeum vulgare
Probe
i_12_11527
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_11527
Type
SNP
Synonym
Other name12_11527
POPA1_1527
Map
Barley-Core-2014_3H40.48
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_11527
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.