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GrainGenes Marker Report: POPA2_0021

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Locus
POPA2_0021
Type
SNP
Synonym
Other name11_20021
BOPA1_10360-563
BOPA1_11_20021
Synonym11_20021
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H101.1
Hordeum-OPA-2009-1H109.82
Hordeum-OPA123-2008-1H109.82
Hordeum-OPAConsensus-2011-1H111.81
Hordeum-OWB-OPA2008-1H122.11
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_20144
i_11_20021
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_0021
[ Show all 12 ]



Probe for Locus
HAR35_20144
Locus
POPA2_0021
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_20021
Locus
POPA2_0021
11_20021
BOPA1_10360-563
BOPA1_11_20021
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_20021



Locus for Probe
BOPA1_10360-563
Type
SNP
Synonym
Other name11_20021
BOPA1_11_20021
POPA2_0021
Species
Hordeum vulgare
Probe
i_11_20021
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_20021
Type
SNP
Synonym
Other name11_20021
BOPA1_10360-563
POPA2_0021
Map
Barley-Core-2014_1H109.83
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_20021
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_20021
Type
SNP
Synonym
Other nameBOPA1_10360-563
BOPA1_11_20021
POPA2_0021
SynonymPOPA2_0021
Species
Hordeum vulgare
Probe
i_11_20021
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.