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GrainGenes Marker Report: POPA2_0121

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Locus
POPA2_0121
Type
SNP
Synonym
Other name11_20121
BOPA1_11_20121
BOPA1_12492-541
Synonym11_20121
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H72.5
Hordeum-OPA-2009-1H75.45
Hordeum-OPA123-2008-1H75.45
Hordeum-OPAConsensus-2011-1H80.47
Hordeum-OWB-OPA2008-1H82.961
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_22108
i_11_20121
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_0121
[ Show all 11 ]



Probe for Locus
HAR35_22108
Locus
POPA2_0121
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_20121
Locus
POPA2_0121
AK365931
11_20121
BOPA1_12492-541
BOPA1_11_20121
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_20121



Locus for Probe
AK365931
Chromosome
1H
Map
Barley_2012_AC3_genes_1H72.5921
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_20121



Locus for Probe
BOPA1_12492-541
Type
SNP
Synonym
Other name11_20121
BOPA1_11_20121
POPA2_0121
Species
Hordeum vulgare
Probe
i_11_20121
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_20121
Type
SNP
Synonym
Other name11_20121
BOPA1_12492-541
POPA2_0121
Map
Barley-Core-2014_1H73.59
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_20121
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_20121
Type
SNP
Synonym
Other nameBOPA1_11_20121
BOPA1_12492-541
POPA2_0121
SynonymPOPA2_0121
Species
Hordeum vulgare
Probe
i_11_20121
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.