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GrainGenes Marker Report: POPA2_0355

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Locus
POPA2_0355
Type
SNP
Synonym
Other name11_20355
BOPA1_11_20355
BOPA1_2389-526
Synonym11_20355
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H110.32
Hordeum-OPA123-2008-6H110.32
Hordeum-OPAConsensus-2011-6H120.69
Hordeum-OWB-OPA2008-6H136.309
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_13865
i_11_20355
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_0355
[ Show all 12 ]



Probe for Locus
HAR35_13865
Locus
POPA2_0355
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_20355
Locus
11_20355
POPA2_0355
BOPA1_2389-526
BOPA1_11_20355
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_20355



Locus for Probe
BOPA1_2389-526
Type
SNP
Synonym
Other name11_20355
BOPA1_11_20355
POPA2_0355
Species
Hordeum vulgare
Probe
i_11_20355
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_20355
Type
SNP
Synonym
Other name11_20355
BOPA1_2389-526
POPA2_0355
Map
Barley-Core-2014_6H113.05
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_20355
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_20355
Type
SNP
Synonym
Other nameBOPA1_11_20355
BOPA1_2389-526
POPA2_0355
SynonymPOPA2_0355
Species
Hordeum vulgare
Probe
i_11_20355
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.