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GrainGenes Marker Report: POPA2_0536

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Locus
POPA2_0536
Type
SNP
Synonym
Other name11_20536
BOPA1_11_20536
BOPA1_3362-644
Synonym11_20536
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H157.4
Hordeum-OPA-2009-5H177.65
Hordeum-OPA123-2008-5H177.65
Hordeum-OPAConsensus-2011-5H168.44
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16285
i_11_20536
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_0536
[ Show all 12 ]



Probe for Locus
HAR35_16285
Locus
POPA2_0536
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_20536
Locus
POPA2_0536
AK367079
11_20536
BOPA1_3362-644
BOPA1_11_20536
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_20536



Locus for Probe
11_20536
Type
SNP
Synonym
Other nameBOPA1_11_20536
BOPA1_3362-644
POPA2_0536
SynonymPOPA2_0536
Chromosome
5H
Map
Barley2012_9KSNPv2-5H157.4
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP v2
Species
Hordeum vulgare
Probe
i_11_20536
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
AK367079
Chromosome
5H
Map
Barley_2012_AC3_genes_5H157.361
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_20536



Locus for Probe
BOPA1_3362-644
Type
SNP
Synonym
Other name11_20536
BOPA1_11_20536
POPA2_0536
Species
Hordeum vulgare
Probe
i_11_20536
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_20536
Type
SNP
Synonym
Other name11_20536
BOPA1_3362-644
POPA2_0536
Map
Barley-Core-2014_5H167.35
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_20536
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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