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GrainGenes Marker Report: POPA2_0549

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Locus
POPA2_0549
Type
SNP
Synonym
Other name11_20549
BOPA1_11_20549
BOPA1_3398-163
Synonym11_20549
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H108.01
Hordeum-OPA123-2008-5H108.01
Hordeum-OPAConsensus-2011-5H95.11
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1705
i_11_20549
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_0549
[ Show all 10 ]



Probe for Locus
HAR35_1705
Locus
POPA2_0549
POPA1_0465
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_20549
Locus
11_20549
POPA2_0549
BOPA1_3398-163
BOPA1_11_20549
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_20549



Locus for Probe
11_20549
Type
SNP
Synonym
Other nameBOPA1_11_20549
BOPA1_3398-163
POPA2_0549
SynonymPOPA2_0549
Chromosome
U
Species
Hordeum vulgare
Probe
i_11_20549
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_3398-163
Type
SNP
Synonym
Other name11_20549
BOPA1_11_20549
POPA2_0549
Species
Hordeum vulgare
Probe
i_11_20549
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_20549
Type
SNP
Synonym
Other name11_20549
BOPA1_3398-163
POPA2_0549
Map
Barley-Core-2014_5H87.71
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_20549
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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