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GrainGenes Marker Report: POPA2_0757

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Locus
POPA2_0757
Type
SNP
Synonym
Other name11_20757
BOPA1_11_20757
BOPA1_4511-1878
Synonym11_20757
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H47.9
Hordeum-OPA-2009-1H50.6
Hordeum-OPA123-2008-1H50.6
Hordeum-OPAConsensus-2011-1H42.42
Hordeum-OWB-OPA2008-1H57.714
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_2504
i_11_20757
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_0757
[ Show all 11 ]



Probe for Locus
HAR35_2504
Locus
POPA2_0757
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_20757
Locus
POPA2_0757
AK250671.1
11_20757
BOPA1_4511-1878
BOPA1_11_20757
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_20757



Locus for Probe
11_20757
Type
SNP
Synonym
Other nameBOPA1_11_20757
BOPA1_4511-1878
POPA2_0757
SynonymPOPA2_0757
Species
Hordeum vulgare
Probe
i_11_20757
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
AK250671.1
Chromosome
1H
Map
Barley_2012_AC3_genes_1H48.017
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
FLbaf93d23
i_11_20757
Reference
ReferenceSato K et al. (2009) Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Research 16:81-89.



Locus for Probe
BOPA1_4511-1878
Type
SNP
Synonym
Other name11_20757
BOPA1_11_20757
POPA2_0757
Species
Hordeum vulgare
Probe
i_11_20757
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_20757
Type
SNP
Synonym
Other name11_20757
BOPA1_4511-1878
POPA2_0757
Map
Barley-Core-2014_1H50
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_20757
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.