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GrainGenes Marker Report: POPA2_0848

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Locus
POPA2_0848
Type
SNP
Synonym
Other name11_20848
BOPA1_11_20848
BOPA1_4993-1008
Synonym11_20848
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H71.08
Hordeum-OPA123-2008-6H71.08
Hordeum-OWB-OPA2008-6H93.064
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17087
i_11_20848
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_0848
[ Show all 9 ]



Probe for Locus
HAR35_17087
Locus
POPA2_0848
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_20848
Locus
11_20848
POPA2_0848
BOPA1_4993-1008
BOPA1_11_20848
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_20848



Locus for Probe
11_20848
Type
SNP
Synonym
Other nameBOPA1_11_20848
BOPA1_4993-1008
POPA2_0848
Previous name11_0814
SynonymPOPA2_0848
Chromosome
U
Species
Hordeum vulgare
Probe
i_11_20848
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_4993-1008
Type
SNP
Synonym
Other name11_20848
BOPA1_11_20848
POPA2_0848
Species
Hordeum vulgare
Probe
i_11_20848
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_20848
Type
SNP
Synonym
Other name11_20848
BOPA1_4993-1008
POPA2_0848
Species
Hordeum vulgare
Probe
i_11_20848
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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