Query (optional)   in Class  

GrainGenes Marker Report: POPA2_1008

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA2_1008
Type
SNP
Synonym
Other name11_21008
BOPA1_11_21008
BOPA1_5840-659
Synonym11_21008
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H162.15
Hordeum-OPA123-2008-3H162.15
Hordeum-OPAConsensus-2011-3H169.29
Hordeum-OWB-OPA2008-3H192.725
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17848
i_11_21008
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1008
[ Show all 13 ]



Probe for Locus
HAR35_17848
Locus
POPA2_1008
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21008
Locus
AK358057
11_21008
POPA2_1008
BOPA1_5840-659
BOPA1_11_21008
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21008



Locus for Probe
11_21008
Type
SNP
Synonym
Other nameBOPA1_11_21008
BOPA1_5840-659
POPA2_1008
SynonymPOPA2_1008
Species
Hordeum vulgare
Probe
i_11_21008
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
AK358057
Chromosome
3H
Map
Barley_2012_AC3_genes_3H143.13
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_21008



Locus for Probe
BOPA1_5840-659
Type
SNP
Synonym
Other name11_21008
BOPA1_11_21008
POPA2_1008
Species
Hordeum vulgare
Probe
i_11_21008
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21008
Type
SNP
Synonym
Other name11_21008
BOPA1_5840-659
POPA2_1008
Map
Barley-Core-2014_3H151.17
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21008
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.