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GrainGenes Marker Report: POPA2_1052

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Locus
POPA2_1052
Type
SNP
Synonym
Other name11_21052
BOPA1_11_21052
BOPA1_6116-709
Synonym11_21052
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H189.6
Hordeum-OPA123-2008-5H189.6
Hordeum-OPAConsensus-2011-5H187.2
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3405
i_11_21052
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1052
[ Show all 12 ]



Probe for Locus
HAR35_3405
Locus
POPA2_1052
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21052
Locus
11_21052
POPA2_1052
BOPA1_6116-709
BOPA1_11_21052
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21052



Locus for Probe
11_21052
Type
SNP
Synonym
Other nameBOPA1_11_21052
BOPA1_6116-709
POPA2_1052
SynonymPOPA2_1052
Species
Hordeum vulgare
Probe
i_11_21052
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_6116-709
Type
SNP
Synonym
Other name11_21052
BOPA1_11_21052
POPA2_1052
Species
Hordeum vulgare
Probe
i_11_21052
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21052
Type
SNP
Synonym
Other name11_21052
BOPA1_6116-709
POPA2_1052
Map
Barley-Core-2014_5H177.5
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21052
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.