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GrainGenes Marker Report: POPA2_1160

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Locus
POPA2_1160
Type
SNP
Synonym
Other name11_21160
BOPA1_11_21160
BOPA1_6868-595
Synonym11_21160
Chromosome
7H
Chromosome Arm
7HL
Map
Barley, 2012 9KSNP 7H123.9
Hordeum-OPA-2009-7H136.62
Hordeum-OPA123-2008-7H136.62
Hordeum-OPAConsensus-2011-7H137.31
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4068
i_11_21160
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1160
[ Show all 11 ]



Probe for Locus
HAR35_4068
Locus
POPA2_1160
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21160
Locus
POPA2_1160
MLOC_60881.1
11_21160
BOPA1_6868-595
BOPA1_11_21160
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21160



Locus for Probe
11_21160
Type
SNP
Synonym
Other nameBOPA1_11_21160
BOPA1_6868-595
POPA2_1160
SynonymPOPA2_1160
Species
Hordeum vulgare
Probe
i_11_21160
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
MLOC_60881.1
Chromosome
7H
Map
Barley_2012_AC3_genes_7H123.938
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_21160



Locus for Probe
BOPA1_6868-595
Type
SNP
Synonym
Other name11_21160
BOPA1_11_21160
POPA2_1160
Species
Hordeum vulgare
Probe
i_11_21160
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21160
Type
SNP
Synonym
Other name11_21160
BOPA1_6868-595
POPA2_1160
Map
Barley-Core-2014_7H141.37
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21160
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.