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GrainGenes Marker Report: POPA2_1189

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Locus
POPA2_1189
Type
SNP
Synonym
Other name11_21189
BOPA1_11_21189
BOPA1_7045-950
Synonym11_21189
Chromosome
3H
Chromosome Arm
3HS
Map
Barley, 2012 9KSNP 3H46
Hordeum-OPA-2009-3H48.63
Hordeum-OPA123-2008-3H48.63
Hordeum-OPAConsensus-2011-3H52.17
Hordeum-OWB-OPA2008-3H54.231
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_3548
i_11_21189
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1189
[ Show all 12 ]



Probe for Locus
HAR35_3548
Locus
POPA2_1189
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21189
Locus
POPA2_1189
AK248960.1
11_21189
BOPA1_7045-950
BOPA1_11_21189
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21189



Locus for Probe
AK248960.1
Chromosome
3H
Map
Barley_2012_AC3_genes_3H46.034
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
FLbaf17k23
i_11_21189
Reference
ReferenceSato K et al. (2009) Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Research 16:81-89.



Locus for Probe
11_21189
Type
SNP
Synonym
Other nameBOPA1_11_21189
BOPA1_7045-950
POPA2_1189
SynonymPOPA2_1189
Species
Hordeum vulgare
Probe
i_11_21189
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_7045-950
Type
SNP
Synonym
Other name11_21189
BOPA1_11_21189
POPA2_1189
Species
Hordeum vulgare
Probe
i_11_21189
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21189
Type
SNP
Synonym
Other name11_21189
BOPA1_7045-950
POPA2_1189
Map
Barley-Core-2014_3H55.57
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21189
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.