Query (optional)   in Class  

GrainGenes Marker Report: POPA2_1246

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA2_1246
Type
SNP
Synonym
Other name11_21246
BOPA1_11_21246
BOPA1_7624-359
Synonym11_21246
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H22.35
Hordeum-OPA123-2008-6H22.35
Hordeum-OPAConsensus-2011-6H25.88
Hordeum-OWB-OPA2008-6H31.161
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_3329
i_11_21246
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1246
[ Show all 11 ]



Probe for Locus
HAR35_3329
Locus
POPA2_1246
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21246
Locus
MLOC_74170.1
11_21246
POPA2_1246
BOPA1_7624-359
BOPA1_11_21246
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21246



Locus for Probe
11_21246
Type
SNP
Synonym
Other nameBOPA1_11_21246
BOPA1_7624-359
POPA2_1246
SynonymPOPA2_1246
Species
Hordeum vulgare
Probe
i_11_21246
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
MLOC_74170.1
Chromosome
6H
Map
Barley_2012_AC3_genes_6H19.4051
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_21246



Locus for Probe
BOPA1_7624-359
Type
SNP
Synonym
Other name11_21246
BOPA1_11_21246
POPA2_1246
Species
Hordeum vulgare
Probe
i_11_21246
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21246
Type
SNP
Synonym
Other name11_21246
BOPA1_7624-359
POPA2_1246
Map
Barley-Core-2014_6H22.43
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21246
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.