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GrainGenes Marker Report: POPA2_1305

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Locus
POPA2_1305
Type
SNP
Synonym
Other name11_21305
BOPA1_11_21305
BOPA1_8180-450
Synonym11_21305
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H59.1
Hordeum-OPA-2009-3H67.57
Hordeum-OPA123-2008-3H67.57
Hordeum-OPAConsensus-2011-3H80.49
Hordeum-OWB-OPA2008-3H75.055
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_18680
i_11_21305
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1305
[ Show all 9 ]



Probe for Locus
HAR35_18680
Locus
POPA2_1305
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21305
Locus
POPA2_1305
11_21305
BOPA1_8180-450
BOPA1_11_21305
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21305



Locus for Probe
11_21305
Type
SNP
Synonym
Other nameBOPA1_11_21305
BOPA1_8180-450
POPA2_1305
SynonymPOPA2_1305
Species
Hordeum vulgare
Probe
i_11_21305
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_8180-450
Type
SNP
Synonym
Other name11_21305
BOPA1_11_21305
POPA2_1305
Species
Hordeum vulgare
Probe
i_11_21305
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21305
Type
SNP
Synonym
Other name11_21305
BOPA1_8180-450
POPA2_1305
Map
Barley-Core-2014_3H65.16
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21305
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.