Query (optional)   in Class  

GrainGenes Marker Report: POPA2_1318

[Submit comment/correction]

Locus
POPA2_1318
Type
SNP
Synonym
Other name11_21318
BOPA1_11_21318
BOPA1_8320-955
Synonym11_21318
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H53.18
Hordeum-OPA123-2008-5H53.18
Hordeum-OPAConsensus-2011-5H44.23
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_4239
i_11_21318
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1318
[ Show all 12 ]



Probe for Locus
HAR35_4239
Locus
POPA2_1318
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21318
Locus
MLOC_12555.1
11_21318
POPA2_1318
BOPA1_8320-955
BOPA1_11_21318
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21318



Locus for Probe
MLOC_12555.1
Chromosome
5H
Map
Barley_2012_AC3_genes_5H44.5139
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_21318



Locus for Probe
11_21318
Type
SNP
Synonym
Other nameBOPA1_11_21318
BOPA1_8320-955
POPA2_1318
SynonymPOPA2_1318
Chromosome
U
In QTL
QDon.EEBC-5H.1
Species
Hordeum vulgare
Probe
i_11_21318
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_8320-955
Type
SNP
Synonym
Other name11_21318
BOPA1_11_21318
POPA2_1318
Species
Hordeum vulgare
Probe
i_11_21318
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21318
Type
SNP
Synonym
Other name11_21318
BOPA1_8320-955
POPA2_1318
Map
Barley-Core-2014_5H43.92
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21318
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.