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GrainGenes Marker Report: POPA2_1400

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Locus
POPA2_1400
Type
SNP
Synonym
Other name11_21400
BOPA1_11_21400
BOPA1_9208-919
Synonym11_21400
Chromosome
4H
Chromosome Arm
4HL
Map
Hordeum-OPA-2009-4H61.04
Hordeum-OPA123-2008-4H61.04
Hordeum-OPAConsensus-2011-4H68.84
Hordeum-OWB-OPA2008-4H58.938
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_5452
i_11_21400
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1400
[ Show all 11 ]



Probe for Locus
HAR35_5452
Locus
POPA2_1400
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21400
Locus
AK370070
11_21400
POPA2_1400
BOPA1_9208-919
BOPA1_11_21400
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21400



Locus for Probe
AK370070
Chromosome
4H
Map
Barley_2012_AC3_genes_4H55.7365
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_21400



Locus for Probe
11_21400
Type
SNP
Synonym
Other nameBOPA1_11_21400
BOPA1_9208-919
POPA2_1400
SynonymPOPA2_1400
Species
Hordeum vulgare
Probe
i_11_21400
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_9208-919
Type
SNP
Synonym
Other name11_21400
BOPA1_11_21400
POPA2_1400
Species
Hordeum vulgare
Probe
i_11_21400
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21400
Type
SNP
Synonym
Other name11_21400
BOPA1_9208-919
POPA2_1400
Map
Barley-Core-2014_4H55.65
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21400
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.