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GrainGenes Marker Report: POPA2_1469

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Locus
POPA2_1469
Type
SNP
Synonym
Other name11_21469
BOPA1_11_21469
BOPA1_ABC03951-1-3-383
Synonym11_21469
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H66.6
Hordeum-OPA-2009-6H67.7
Hordeum-OPA123-2008-6H67.7
Hordeum-OPAConsensus-2011-6H76.03
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15825
i_11_21469
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 2_1469
[ Show all 11 ]



Probe for Locus
HAR35_15825
Locus
POPA2_1469
POPA1_0366
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_21469
Locus
POPA2_1469
AK252473.1
11_21469
BOPA1_ABC03951-1-3-383
BOPA1_11_21469
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_21469



Locus for Probe
AK252473.1
Chromosome
6H
Map
Barley_2012_AC3_genes_6H66.7847
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
FLbaf159d07
i_11_21469
Reference
ReferenceSato K et al. (2009) Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Research 16:81-89.



Locus for Probe
11_21469
Type
SNP
Synonym
Other nameBOPA1_11_21469
BOPA1_ABC03951-1-3-383
POPA2_1469
SynonymPOPA2_1469
Species
Hordeum vulgare
Probe
i_11_21469
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_ABC03951-1-3-383
Type
SNP
Synonym
Other name11_21469
BOPA1_11_21469
POPA2_1469
Species
Hordeum vulgare
Probe
i_11_21469
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_21469
Type
SNP
Synonym
Other name11_21469
BOPA1_ABC03951-1-3-383
POPA2_1469
Map
Barley-Core-2014_6H73.83
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_21469
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.