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GrainGenes Marker Report: POPA3_0090

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Locus
POPA3_0090
Type
SNP
Synonym
Other name12_30090
BOPA2_12_30090
Synonym12_30090
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H86
Hordeum-OPA-2009-3H97.71
Hordeum-OPA123-2008-3H97.71
Hordeum-OPAConsensus-2011-3H108
Hordeum-OWB-OPA2008-3H112.809
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17441
i_12_30090
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_0090
[ Show all 12 ]
Probe for Locus
HAR35_17441
Locus
POPA3_0090
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J


Probe
i_12_30090
Locus
POPA3_0090
MLOC_56891.2
12_30090
BOPA2_12_30090
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_30090


Locus for Probe
MLOC_56891.2
Chromosome
3H
Map
Barley_2012_AC3_genes_3H86.2606
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_30090


Locus for Probe
12_30090
Type
SNP
Synonym
Other nameBOPA2_12_30090
POPA3_0090
Previous name12_0631
SynonymPOPA3_0090
Chromosome
3H
Map
Barley2012_9KSNPv2-3H86
[ Show Nearby Loci ]
In QTL
QAa.StMo-3H
QGpc.StMo-3H.1
Map Data
Barley, 2012 9KSNP v2
Species
Hordeum vulgare
Probe
i_12_30090
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.


Locus for Probe
BOPA2_12_30090
Type
SNP
Synonym
Other name12_30090
POPA3_0090
Map
Barley-Core-2014_3H89.77
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_30090
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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