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GrainGenes Marker Report: POPA3_0504

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Locus
POPA3_0504
Type
SNP
Synonym
Other name12_30504
BOPA2_12_30504
Synonym12_30504
CDO484
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H182.16
Hordeum-OPA123-2008-5H182.16
Hordeum-OPAConsensus-2011-5H173.5
Hordeum-OWB-OPA2008-5H225.842
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_16073
i_12_30504
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_0504
[ Show all 13 ]



Probe for Locus
HAR35_16073
Locus
POPA3_0504
Synonym
SynonymCDO484
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_30504
Locus
MLOC_44001.3
12_30504
POPA3_0504
BOPA2_12_30504
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_30504



Locus for Probe
MLOC_44001.3
Chromosome
5H
Map
Barley_2012_AC3_genes_5H164.722
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_30504



Locus for Probe
12_30504
Type
SNP
Synonym
Other nameBOPA2_12_30504
POPA3_0504
Previous name12_0865
SynonymPOPA3_0504
Chromosome
U
In QTL
QWp.WA2-5H
Species
Hordeum vulgare
Probe
i_12_30504
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_30504
Type
SNP
Synonym
Other name12_30504
POPA3_0504
Map
Barley-Core-2014_5H172.25
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_30504
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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