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GrainGenes Marker Report: POPA3_0555

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Locus
POPA3_0555
Type
SNP
Synonym
Other name12_30555
BOPA2_12_30555
Synonym12_30555
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H106.46
Hordeum-OPA123-2008-2H106.46
Hordeum-OPAConsensus-2011-2H118.39
Hordeum-OWB-OPA2008-2H124.503
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_18774
i_12_30555
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_0555
[ Show all 12 ]



Probe for Locus
HAR35_18774
Locus
POPA3_0555
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_30555
Locus
AK249620.1
12_30555
POPA3_0555
BOPA2_12_30555
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_30555



Locus for Probe
AK249620.1
Chromosome
2H
Map
Barley_2012_AC3_genes_2H99.2569
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
FLbaf44h24
i_12_30555
Reference
ReferenceSato K et al. (2009) Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Research 16:81-89.



Locus for Probe
12_30555
Type
SNP
Synonym
Other nameBOPA2_12_30555
POPA3_0555
SynonymPOPA3_0555
Species
Hordeum vulgare
Probe
i_12_30555
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_30555
Type
SNP
Synonym
Other name12_30555
POPA3_0555
Map
Barley-Core-2014_2H112.22
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_30555
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.