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GrainGenes Marker Report: POPA3_1009

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Locus
POPA3_1009
Type
SNP
Synonym
Other name12_31009
BOPA2_12_31009
Synonym12_31009
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H48.63
Hordeum-OPA123-2008-3H48.63
Hordeum-OPAConsensus-2011-3H50.85
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_19359
i_12_31009
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_1009
[ Show all 12 ]



Probe for Locus
HAR35_19359
Locus
POPA3_1009
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_31009
Locus
12_31009
POPA3_1009
BOPA2_12_31009
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_31009



Locus for Probe
12_31009
Type
SNP
Synonym
Other nameBOPA2_12_31009
POPA3_1009
SynonymPOPA3_1009
Species
Hordeum vulgare
Probe
i_12_31009
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_31009
Type
SNP
Synonym
Other name12_31009
POPA3_1009
Map
Barley-Core-2014_3H55.05
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_31009
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.