Query (optional)   in Class  

GrainGenes Marker Report: POPA3_1062

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA3_1062
Type
SNP
Synonym
Other name12_31062
BOPA2_12_31062
Synonym12_31062
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H59.4
Hordeum-OPA123-2008-5H59.4
Hordeum-OPAConsensus-2011-5H51.51
Hordeum-OWB-OPA2008-5H66.008
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_1118
i_12_31062
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_1062
[ Show all 13 ]



Probe for Locus
HAR35_1118
Locus
POPA3_1062
POPA3_1064
POPA3_1063
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_31062
Locus
MLOC_10405.1
12_31062
POPA3_1062
BOPA2_12_31062
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_31062



Locus for Probe
MLOC_10405.1
Chromosome
5H
Map
Barley_2012_AC3_genes_5H47.5883
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_31062
i_12_31064
i_BK_11



Locus for Probe
12_31062
Type
SNP
Synonym
Other nameBOPA2_12_31062
POPA3_1062
SynonymPOPA3_1062
Species
Hordeum vulgare
Probe
i_12_31062
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_31062
Type
SNP
Synonym
Other name12_31062
POPA3_1062
Map
Barley-Core-2014_5H44.99
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_31062
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.