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GrainGenes Marker Report: POPA3_1117

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Locus
POPA3_1117
Type
SNP
Synonym
Other name12_31117
BOPA2_12_31117
Synonym12_31117
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H46.2
Hordeum-OPA-2009-5H56.77
Hordeum-OPA123-2008-5H56.77
Hordeum-OPAConsensus-2011-5H46.38
Hordeum-OWB-OPA2008-5H64.921
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_15437
i_12_31117
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_1117
[ Show all 13 ]



Probe for Locus
HAR35_15437
Locus
POPA2_1536
POPA3_1117
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_31117
Locus
POPA3_1117
MLOC_69295.2
12_31117
BOPA2_12_31117
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_31117



Locus for Probe
MLOC_69295.2
Chromosome
5H
Map
Barley_2012_AC3_genes_5H46.1806
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_31117
i_SCRI_RS_88410



Locus for Probe
12_31117
Type
SNP
Synonym
Other nameBOPA2_12_31117
POPA3_1117
Previous name12_1279
SynonymPOPA3_1117
Chromosome
5H
Map
Barley2012_9KSNPv2-5H46.2
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP v2
Species
Hordeum vulgare
Probe
i_12_31117
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_31117
Type
SNP
Synonym
Other name12_31117
POPA3_1117
Map
Barley-Core-2014_5H43.92
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_31117
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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