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GrainGenes Marker Report: POPA3_1174

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Locus
POPA3_1174
Type
SNP
Synonym
Other name12_31174
BOPA2_12_31174
Synonym12_31174
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H55.94
Hordeum-OPA123-2008-6H55.94
Hordeum-OPAConsensus-2011-6H60.65
Hordeum-OWB-OPA2008-6H68.506
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17201
i_12_31174
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_1174
[ Show all 13 ]



Probe for Locus
HAR35_17201
Locus
POPA3_1174
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_31174
Locus
MLOC_9938.2
12_31174
POPA3_1174
BOPA2_12_31174
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_31174



Locus for Probe
MLOC_9938.2
Chromosome
6H
Map
Barley_2012_AC3_genes_6H55.5241
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_31174



Locus for Probe
12_31174
Type
SNP
Synonym
Other nameBOPA2_12_31174
POPA3_1174
SynonymPOPA3_1174
Species
Hordeum vulgare
Probe
i_12_31174
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_31174
Type
SNP
Synonym
Other name12_31174
POPA3_1174
Map
Barley-Core-2014_6H59.99
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_31174
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.