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GrainGenes Marker Report: POPA3_1324

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Locus
POPA3_1324
Type
SNP
Synonym
Other name12_31324
BOPA2_12_31324
Synonym12_31324
Chromosome
4H
Chromosome Arm
4HS
Map
Barley, 2012 9KSNP 4H1.1
Hordeum-OPA-2009-4H0.74
Hordeum-OPA123-2008-4H0.74
Hordeum-OPAConsensus-2011-4H0.75
Hordeum-OWB-OPA2008-4H1.087
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_21988
i_12_31324
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_1324
[ Show all 12 ]



Probe for Locus
HAR35_21988
Locus
POPA3_1324
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_31324
Locus
POPA3_1324
AK371529
12_31324
BOPA2_12_31324
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_31324



Locus for Probe
AK371529
Chromosome
4H
Map
Barley_2012_AC3_genes_4H1.06232
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_31324



Locus for Probe
12_31324
Type
SNP
Synonym
Other nameBOPA2_12_31324
POPA3_1324
SynonymPOPA3_1324
Species
Hordeum vulgare
Probe
i_12_31324
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_31324
Type
SNP
Synonym
Other name12_31324
POPA3_1324
Map
Barley-Core-2014_4H1.51
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_31324
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.