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GrainGenes Marker Report: POPA3_1446

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Locus
POPA3_1446
Type
SNP
Synonym
Other name12_31446
BOPA2_12_31446
Synonym12_31446
Chromosome
2H
Chromosome Arm
2HS
Map
Barley, SFNB QTL 2017 2H0
Hordeum-OPA-2009-2H0
Hordeum-OPA123-2008-2H0
Hordeum-OPAConsensus-2011-2H0.66
Hordeum-OWB-OPA2008-2H1.12
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, SFNB QTL 2017
Species
Hordeum vulgare
Probe
HAR35_4853
i_12_31446
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_1446
[ Show all 10 ]



Probe for Locus
HAR35_4853
Locus
POPA3_1446
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_31446
Locus
AK362635
12_31446
POPA3_1446
BOPA2_12_31446
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_31446



Locus for Probe
AK362635
Chromosome
2H
Map
Barley_2012_AC3_genes_2H
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_31446



Locus for Probe
12_31446
Type
SNP
Synonym
Other nameBOPA2_12_31446
POPA3_1446
SynonymPOPA3_1446
Species
Hordeum vulgare
Probe
i_12_31446
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_31446
Type
SNP
Synonym
Other name12_31446
POPA3_1446
Map
Barley-Core-2014_2H1.08
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_31446
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.