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GrainGenes Marker Report: PSR115

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Locus
psr115
Type
RFLP
Chromosome
5H
Map
Barley-consensus-2003-5H78.6
Hordeum-CxH-5H218.12
Hordeum-GxH-5H258.72
Oat-2002-OxT-QTL_31138.5
Oat-OxT-31143.1
[ Show Nearby Loci ]
QTL with Locus Marker
QFLDATE.2002-OxT_31
QVERN.2002-OxT_31
Map Data
Barley consensus 2003
Barley, CxH
Barley, GxH
Oat, OxT
Oat-2002-OxT-QTL
Probe
PSR115
Data Source
Langridge, Peter J.
Possible Orthologs
Xpsr115
[ Show all 12 ]
Probe
PSR115
Locus
Xpsr115(Prk)-4A
[ Show all 18 ]
Remarks
Polymorphism scores are given as the percent polymorphic pairwise comparisons, followed by the number of alleles found and number of varieties tested in parentheses.
Type
cDNA
Sequence
PSR115 Forward
PSR115 Reverse
Copy Number
1
Background
1
Cross hybridizes to
Secale cerealegood
Hordeum vulgaregood
Polymorphism
PSR115 H EcoRI29.5 (3, 13)
[ Show all 18 ]
Gel
PSR115 Gale
Linkage Group
5BL
5DL
5HS
4AL
7RS
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
Source Tissue
Leaf
Insert Size
1.4
Clone Vector
pUC18
Vector Enzyme
SmaI
Excision Enzyme
HindIII
EcoRI
Vector PCR primers
5'-d(GTTTTCCCAGTCACGAC)-3'
5'-d(CAGGAAACAGCTATGAC)-3'
Clone Location
Gale, Michael D.
Clone Authority
Chao, Shiaoman
Data Source
Gale, Michael D.97.09


Locus for Probe
D1.1_ctg123
Type
BAC_contig
Map
Ta-Gale-5D100.1
Ta-Physical-Gill-5D5.14
[ Show Nearby Loci ]
Probe
PSR115


Locus for Probe
D1.1_ctg123_1
Type
BAC_contig
Map
Ta-Gale-6D12.5
[ Show Nearby Loci ]
Probe
PSR115
PSR2


Locus for Probe
D1.1_ctg123_2
Type
BAC_contig
Map
Ta-Gale-6D12.7
[ Show Nearby Loci ]
Probe
PSR115
PSR2


Locus for Probe
PSR115
Type
RFLP
Synonym
Other namepsr115
Map
Oat-2016-Consensus-21140.1
Oat-2018-Consensus_Mrg21140.1
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
PSR115
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
HI056O14
Probe
BE403697
PSR115
PSR2


Locus for Probe
HI056P14
Probe
BE403697
PSR115
PSR2


Locus for Probe
Xpsr115
Type
RFLP
Chromosome
7R
Chromosome Arm
5HL
7RS
Map
Hbulbosum-PB1xPB11-560
[ Show all 9 ]
[ Show Nearby Loci ]
Map Data
Barley, IxT/QTL
[ Show all 9 ]
Probe
PSR115
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115(Pk)
Type
RFLP
Chromosome
5D
Chromosome Arm
5DL
Map
Oat-2002-OxT-QTL_31138.5
Ta-Physical-Gill-5ABD93
Ta-Physical-Gill-5D5.14
[ Show Nearby Loci ]
Breakpoint Interval
5DL-5/0
5L-0.85-1.00
Map Data
Oat-2002-OxT-QTL
Wheat, Physical
Species
Triticum aestivum
Probe
PSR115
Candidate Gene
Pk
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115(Pk)-4U
Type
RFLP
Chromosome
4U
Map
Aeumbellulata-Zhang-4100
[ Show Nearby Loci ]
Map Data
Ae. umbellulata, A x C
Probe
PSR115
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115(Pk)-5S
Type
RFLP
Chromosome
5S
Chromosome Arm
5SL
Map
Aelongissima-Zhang-569.8
[ Show Nearby Loci ]
Map Data
Ae. longissima, YxY
Probe
PSR115
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115(Prk)-4A
Map
CS/SQ1-4A76.5
[ Show Nearby Loci ]
Map Data
Wheat, Chinese Spring x SQ1
Probe
PSR115


Locus for Probe
Xpsr115-4A
Type
RFLP
Chromosome
4A
Chromosome Arm
4AL
Map
Ta-Gale-4A77
Ta-Synthetic/Opata-4A70
Ta-Synthetic/Opata-BARC-4A56.7
Ta-Synthetic/Opata-GPW-4A102
Triticum-FxO-4A196
[ Show Nearby Loci ]
Map Data
Wheat, Forno x Oberkulmer
Wheat, Gale
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Species
Triticum aestivum
Probe
PSR115
Reference
ReferenceLiu CJ et al. (1992) Nonhomoeologous translocations between group 4, 5 and 7 chromosomes within wheat and rye. Theoretical and Applied Genetics 83:305-312.
Data Source
Gale, Michael D.97.10
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115-5B
Type
RFLP
Chromosome
5B
Chromosome Arm
5BL
Map
Ta-Gale-5B100.1
Tturgidum-MxM-5B134.7
Tturgidum-MxM-AFLP-5B135.8
Tturgidum-SSR-5B136.6
[ Show Nearby Loci ]
Map Data
T. turgidum, Messapia x dicoccoides
T. turgidum, Messapia x dicoccoides, AFLP
T. turgidum, Messapia x dicoccoides, SSR
Wheat, Gale
Species
Triticum aestivum
Probe
PSR115
Reference
ReferenceLiu CJ et al. (1992) Nonhomoeologous translocations between group 4, 5 and 7 chromosomes within wheat and rye. Theoretical and Applied Genetics 83:305-312.
Data Source
Gale, Michael D.97.10
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115-5D
Type
RFLP
Chromosome
5D
Chromosome Arm
5DL
Map
Ta-Gale-5D100.1
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR115
Reference
ReferenceLiu CJ et al. (1992) Nonhomoeologous translocations between group 4, 5 and 7 chromosomes within wheat and rye. Theoretical and Applied Genetics 83:305-312.
Data Source
Gale, Michael D.97.10
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115-7R
Type
RFLP
Chromosome
7R
Map
Secale-N6xN2-2004-7R29.7
Secale-N7xN2-2004-7R14.3
Secale-N7xN6-2004-7R20.7
Secale-PxP-2004-7R25.1
[ Show Nearby Loci ]
Map Data
Rye, N6 x N2, 2004
Rye, N7 x N2, 2004
Rye, N7 x N6, 2004
Rye, P87 x P105, 2004
Species
Secale cereale
Probe
PSR115
Reference
ReferenceKhlestkina EK et al. (2004) Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags Theoretical and Applied Genetics 109:725-732.
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115.1
Type
RFLP
Chromosome
4A
Map
Wheat-Composite2004-4A105
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
PSR115
Possible Orthologs
psr115
[ Show all 12 ]
Locus for Probe
Xpsr115.2
Type
RFLP
Chromosome
4A
Map
Wheat-Composite2004-4A107
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
PSR115
Possible Orthologs
psr115
[ Show all 12 ]

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