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GrainGenes Marker Report: PSR116

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Locus
PSR116
Type
RFLP
Map
Hordeum-Bins-3H68
[ Show Nearby Loci ]
Map Data
Barley, BinMap 2005
Probe
PSR116
Data Source
Kleinhofs, Andris
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs
Xpsr116
Xpsr116(Pp)
Xpsr116-3A
Xpsr116-3B
Xpsr116-3D



Probe
PSR116
Locus
Xpsr116-3A
[ Show all 6 ]
Synonym
SynonymHAR35_259
HAR35_28810
Remarks
Polymorphism scores are given as the percent polymorphic pairwise comparisons, followed by the number of alleles found and number of varieties tested in parentheses.
Type
cDNA
Sequence
PSR116 Forward
PSR116 Reverse
Copy Number
1
Background
0
Cross hybridizes to
Secale cerealegood
Hordeum vulgaregood
Polymorphism
PSR116 H EcoRI15.4 (2, 13)
[ Show all 21 ]
Gel
PSR116 Gale
Linkage Group
3AL
3BL
3DL
3H
3RL
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
Source Tissue
Leaf
Insert Size
1.3
Clone Vector
pUC18
Vector Enzyme
SmaI
Excision Enzyme
HindIII
EcoRI
Vector PCR primers
5'-d(GTTTTCCCAGTCACGAC)-3'
5'-d(CAGGAAACAGCTATGAC)-3'
Clone Location
Gale, Michael D.
Devos, Katrien M.
Clone Authority
Chao, Shiaoman
Devos, Katrien M.
Data Source
Gale, Michael D.97.09



Locus for Probe
Xpsr116
Type
RFLP
Chromosome
3D
3R
Chromosome Arm
3DL
3RL
Map
Rye-2009-Consensus-3R79.5
Secale-Devos-3R0
Secale-DxR-RAPD-3R62.9
Ta-Physical-Gill-3ABD25
[ Show Nearby Loci ]
Breakpoint Interval
3L-0.22-0.28
Map Data
Rye, Ds2 x RxL10
Rye, Ds2 x RxL10, RAPD
Rye_2009_consensus
Wheat, Physical
Species
Triticum aestivum
Probe
PSR116
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Data Source
Gale, Michael D.93.03
Possible Orthologs
PSR116
Xpsr116(Pp)
Xpsr116-3A
Xpsr116-3B
Xpsr116-3D



Locus for Probe
Xpsr116(Pp)
Type
RFLP
Probe
PSR116
Possible Orthologs
PSR116
Xpsr116
Xpsr116-3A
Xpsr116-3B
Xpsr116-3D



Locus for Probe
Xpsr116-3A
Type
RFLP
Chromosome
3A
Chromosome Arm
3AL
Map
Ta-Gale-3A2.2
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR116
Reference
ReferenceDevos KM et al. (1992) RFLP-based genetic map of the homoeologous group 3 chromosomes of wheat and rye Theoretical and Applied Genetics 83:931-939.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR116
Xpsr116
Xpsr116(Pp)
Xpsr116-3B
Xpsr116-3D



Locus for Probe
Xpsr116-3B
Type
RFLP
Chromosome
3B
Chromosome Arm
3BL
Map
Ta-Gale-3B2.2
Triticum-FxO-3B44
[ Show Nearby Loci ]
Map Data
Wheat, Forno x Oberkulmer
Wheat, Gale
Species
Triticum aestivum
Probe
PSR116
Reference
ReferenceDevos KM et al. (1992) RFLP-based genetic map of the homoeologous group 3 chromosomes of wheat and rye Theoretical and Applied Genetics 83:931-939.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR116
Xpsr116
Xpsr116(Pp)
Xpsr116-3A
Xpsr116-3D



Locus for Probe
Xpsr116-3D
Type
RFLP
Chromosome
3D
Chromosome Arm
3DL
Map
Ta-Gale-3D2.2
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR116
Reference
ReferenceDevos KM et al. (1992) RFLP-based genetic map of the homoeologous group 3 chromosomes of wheat and rye Theoretical and Applied Genetics 83:931-939.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR116
Xpsr116
Xpsr116(Pp)
Xpsr116-3A
Xpsr116-3B