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GrainGenes Marker Report: PSR121

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Locus
PSR121
Type
RFLP
Chromosome
1H
Map
Hordeum-Consensus2006-DArT-1H70.3
Hordeum-CxS-1H167.58
[ Show Nearby Loci ]
Map Data
Barley, Consensus 2006, DArT
Barley, CxS
Probe
PSR121
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Remark
Number of populations contributing to the placement of PSR121 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs
Glb3
[ Show all 19 ]



Probe
PSR121
Locus
Xpsr121(Glb3)-1A
[ Show all 22 ]
Synonym
Other nameGlb3
Related Probe
PSR482
Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Type
cDNA
Sequence
PSR121 Forward
PSR121 Reverse
Copy Number
2
Background
0
Cross hybridizes to
Secale cerealegood
Hordeum vulgaregood
Linkage Group
1AL
[ Show all 6 ]
Insert Enzyme
SmaI
Source Gene Class
(1->3)-beta-glucan 3-glucanohydrolase
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
Source Tissue
Leaf
Insert Size
1.1
Clone Vector
pUC18
Vector Enzyme
SmaI
Excision Enzyme
HindIII
EcoRI
Clone Location
Gale, Michael D.
Clone Authority
Chao, Shiaoman
Data Source
Gale, Michael D.97.09
ATMI92.09



Locus for Probe
Glb3
Type
Gene
RFLP
Synonym
SynonymGlb3 (Hordeum)
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-Consensus-3H80.5
[ Show all 12 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 12 ]
Species
Hordeum vulgare
Probe
Glb3
pcBGL32
PSR121
Associated Gene
Glb3 (Hordeum)
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
PSR121
[ Show all 19 ]



Locus for Probe
HD084J18
Probe
PSR121



Locus for Probe
Xpsr121
Type
RFLP
Map
Hordeum-IxT/Q-7H105.6
[ Show Nearby Loci ]
Map Data
Barley, IxT/QTL
2 Point Data
Xpsr121/Ep-B1#1
Xpsr121/Wsp-B1#1
Probe
PSR121
Possible Orthologs
Xpsr121-1A
[ Show all 9 ]



Locus for Probe
Xpsr121(Glb3)
Type
RFLP
Chromosome
7D
Chromosome Arm
7DL
Map
Ta-Physical-Gill-7ABD100
[ Show Nearby Loci ]
Breakpoint Interval
7L-0.99-1.00
Map Data
Wheat, Physical
Species
Triticum aestivum
Probe
PSR121
Candidate Gene
Glb3
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121(Glb3)-1A
Type
RFLP
Synonym
Other nameXGlb3-1A
ReferenceHarcourt RL (1992) DUC-92-RLH.
Chromosome
1A
Chromosome Arm
1AL
Species
Triticum aestivum
Probe
PSR121
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Reference
ReferenceHarcourt RL (1992) DUC-92-RLH.
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121(Glb3)-1B
Type
RFLP
Synonym
Other nameXGlb3-1B
ReferenceHarcourt RL (1992) DUC-92-RLH.
Chromosome
1B
Chromosome Arm
1BL
Species
Triticum aestivum
Probe
PSR121
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Reference
ReferenceHarcourt RL (1992) DUC-92-RLH.
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121(Glb3)-1D
Type
RFLP
Synonym
Other nameXGlb3-1D
ReferenceHarcourt RL (1992) DUC-92-RLH.
Chromosome
1D
Chromosome Arm
1DL
Species
Triticum aestivum
Probe
PSR121
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Reference
ReferenceHarcourt RL (1992) DUC-92-RLH.
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121(Glb3)-4S
Type
RFLP
Chromosome
4S
Chromosome Arm
4SL
Map
Aelongissima-Zhang-4118.6
[ Show Nearby Loci ]
Map Data
Ae. longissima, YxY
Probe
PSR121
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121(Glb3)-6U
Type
RFLP
Chromosome
6U
Chromosome Arm
6UL
Map
Aeumbellulata-Zhang-6109
[ Show Nearby Loci ]
Map Data
Ae. umbellulata, A x C
Probe
PSR121
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121(Glb3)-7A
Type
RFLP
Synonym
Other nameXGlb3-7A
ReferenceDevos KM et al. (1993) Chromosome rearrangements in the rye genome relative to that of wheat. Theoretical and Applied Genetics 85:673-680.
XGlb3-7A
ReferenceMcIntosh RA et al. (1995) Catalogue of gene symbols for wheat. Proceedings of the 8th International Wheat Genetics Symposium 1333-1500.
Chromosome
7A
Chromosome Arm
7AL
Map
Ta-Gale-7A93.5
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR121
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Reference
ReferenceDevos KM et al. (1995) Relationship between chromosome 9 of maize and wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics.
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121(Glb3)-7B
Type
RFLP
Synonym
Other nameXGlb3-7B
ReferenceMcIntosh RA et al. (1995) Catalogue of gene symbols for wheat. Proceedings of the 8th International Wheat Genetics Symposium 1333-1500.
XGlb3-7B
ReferenceDevos KM et al. (1993) Chromosome rearrangements in the rye genome relative to that of wheat. Theoretical and Applied Genetics 85:673-680.
Chromosome
7B
Chromosome Arm
7BL
Map
Ta-Gale-7B93.5
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR121
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Reference
ReferenceDevos KM et al. (1995) Relationship between chromosome 9 of maize and wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics.
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121(Glb3)-7D
Type
RFLP
Synonym
Other nameXGlb3-7D
ReferenceDevos KM et al. (1993) Chromosome rearrangements in the rye genome relative to that of wheat. Theoretical and Applied Genetics 85:673-680.
XGlb3-7D
ReferenceMcIntosh RA et al. (1995) Catalogue of gene symbols for wheat. Proceedings of the 8th International Wheat Genetics Symposium 1333-1500.
Chromosome
7D
Chromosome Arm
7DL
Map
Ta-Gale-7D93.5
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR121
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Reference
ReferenceDevos KM et al. (1995) Relationship between chromosome 9 of maize and wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics.
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121-1A
Type
RFLP
Chromosome
1A
Chromosome Arm
1AL
Species
Triticum aestivum
Probe
PSR121
Reference
ReferenceGale MD (1992) WGS-95-1333-Ref#274.
Possible Orthologs
Xpsr121
[ Show all 9 ]



Locus for Probe
Xpsr121-1B
Type
RFLP
Chromosome
1B
Chromosome Arm
1BL
Species
Triticum aestivum
Probe
PSR121
Reference
ReferenceGale MD (1992) WGS-95-1333-Ref#274.
Possible Orthologs
Xpsr121
[ Show all 9 ]



Locus for Probe
Xpsr121-1D
Type
RFLP
Chromosome
1D
Chromosome Arm
1DL
Species
Triticum aestivum
Probe
PSR121
Reference
ReferenceGale MD (1992) WGS-95-1333-Ref#274.
Possible Orthologs
Xpsr121
[ Show all 9 ]



Locus for Probe
Xpsr121-7A
Type
RFLP
Chromosome
7A
Chromosome Arm
7AL
Map
Triticum-FxO-7AL24
[ Show Nearby Loci ]
Map Data
Wheat, Forno x Oberkulmer
Probe
PSR121
Remark
Segregation significantly distorted in favor of the Oberkulmer alleles (P < 0.05)
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121-7B
Type
RFLP
Map
Ta-Courtot/CS-GPW-7B153.3
[ Show Nearby Loci ]
Map Data
Wheat, Courtot x Chinese Spring, GPW
Probe
PSR121
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121-7D
Type
RFLP
Chromosome Arm
7DL
Species
Triticum aestivum
Probe
PSR121
Reference
Referencede la Pena RC et al. (1996) Linkage relations among eyespot resistance gene Pch2, endopeptidase Ep-A1b and RFLP marker Xpsr121 on chromosome 7A of wheat. Plant Breeding 115:273.
Possible Orthologs
Glb3
[ Show all 19 ]



Locus for Probe
Xpsr121a
Type
RFLP
Chromosome Arm
7HL
Map
Hbulbosum-PB1xPB11-778
Tt-Appels-7D26.85
[ Show Nearby Loci ]
Map Data
H. bulbosum, PB1 x PB11
T.tauschii, Appels
Probe
PSR121
Possible Orthologs
Xpsr121
[ Show all 9 ]



Locus for Probe
Xpsr121b
Type
RFLP
Chromosome Arm
1HS
Map
Hbulbosum-PB1xPB11-138
Tt-Appels-7D12.05
[ Show Nearby Loci ]
Map Data
H. bulbosum, PB1 x PB11
T.tauschii, Appels
Probe
PSR121
Possible Orthologs
Xpsr121
[ Show all 9 ]



Locus for Probe
Xpsr121d
Type
RFLP
Map
Tt-Appels-3D1
[ Show Nearby Loci ]
Map Data
T.tauschii, Appels
Probe
PSR121
Possible Orthologs
Xpsr121
[ Show all 9 ]