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GrainGenes Marker Report: PSR160

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Locus
PSR160
Type
RFLP
Synonym
SynonymPOPA1_0036
Chromosome
7H
Map
Barley-consensus-2003-7H7.6
Hordeum-CxH-7H7.16
[ Show Nearby Loci ]
Map Data
Barley consensus 2003
Barley, CxH
Probe
PSR160
Data Source
Langridge, Peter J.
Possible Orthologs
psr160a
[ Show all 17 ]



Probe
PSR160
Locus
Xpsr160.1(Plc)-4A
[ Show all 21 ]
Synonym
Other namePlc
SynonymHAR35_440
HAR35_56
Related Probe
PSR204
PSR205
PSR472
Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Remarks
Polymorphism scores are given as the percent polymorphic pairwise comparisons, followed by the number of alleles found and number of varieties tested in parentheses.
Type
cDNA
Sequence
PSR160
Copy Number
1
Background
0
Cross hybridizes to
Secale cerealegood
Hordeum vulgaregood
Polymorphism
PSR160 H HindIII56.4 (3, 13)
[ Show all 14 ]
Gel
PSR160 Gale
Linkage Group
4AL
7AS
7DS
7H
2R
Source Gene Class
Plastocyanin
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
Source Tissue
Leaf
Insert Size
0.5
Clone Vector
pUC18
Vector Enzyme
SmaI
Excision Enzyme
HindIII
EcoRI
Clone Location
Gale, Michael D.
Clone Authority
Chao, Shiaoman
Data Source
Gale, Michael D.97.09



Locus for Probe
PSR160B
Type
RFLP
Synonym
Other namepsr160b
Map
Oat-2016-Consensus-28.5
Oat-2018-Consensus_Mrg028.5
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Avena sativa L.
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
PSR160A
Type
RFLP
Synonym
Other namepsr160a
Map
Oat-2016-Consensus-1233.4
Oat-2018-Consensus_Mrg1233.4
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Plc
Type
Gene
RFLP
Synonym
SynonymPlc (Avena)
Chromosome
7H
Chromosome Arm
7HS
Map
Barley-Consensus-7H-68.4
[ Show all 12 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 14 ]
Probe
pKG4438
PSR160
Associated Gene
Plc (Avena)
Gene Class
Plumule color
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
Xpsr160(Plc)-4A
Xpsr160(Plc)-7A
Xpsr160(Plc)-7D



Locus for Probe
psr160a
Type
RFLP
Map
Oat-OxT-860.8
[ Show Nearby Loci ]
Map Data
Oat, OxT
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
psr160b
Type
RFLP
Map
Oat-OxT-324.2
[ Show Nearby Loci ]
Map Data
Oat, OxT
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160
Type
RFLP
Chromosome
6R
7D
Chromosome Arm
6RS
7DS
Map
Rye-2009-Consensus-6R63.1
Secale-PxP-60
Secale-PxP-update-6R0
Ta-Physical-Gill-7ABD-95
[ Show Nearby Loci ]
Breakpoint Interval
7S-0.89-1.00
Map Data
Rye, P87 x P105
Rye, P87 x P105, update
Rye_2009_consensus
Wheat, Physical
Species
Triticum aestivum
Probe
PSR160
Candidate Gene
Plc
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160(Plc)
Type
RFLP
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160(Plc)-4A
Type
RFLP
Synonym
Other nameXpsr160-4A
ReferenceMcIntosh RA et al. (1995) Catalogue of gene symbols for wheat. Proceedings of the 8th International Wheat Genetics Symposium 1333-1500.
Previous nameXpsr160-4B
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Chromosome
4A
Chromosome Arm
4AL
Map
Ta-Gale-4A117.3
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR160
Reference
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Possible Orthologs
Plc
Xpsr160(Plc)-7A
Xpsr160(Plc)-7D



Locus for Probe
Xpsr160(Plc)-7A
Type
RFLP
Synonym
Other nameXpsr160-7A
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Chromosome
7A
Chromosome Arm
7AS
Map
Ta-Gale-7A-81.5
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR160
Reference
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Possible Orthologs
Plc
Xpsr160(Plc)-4A
Xpsr160(Plc)-7D



Locus for Probe
Xpsr160(Plc)-7D
Type
RFLP
Synonym
Other nameXpsr160-7D
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Chromosome
7D
Chromosome Arm
7DS
Map
Ta-Gale-7D-81.5
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR160
Reference
ReferenceChao S et al. (1989) RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theoretical and Applied Genetics 78:495-504.
Possible Orthologs
Plc
Xpsr160(Plc)-4A
Xpsr160(Plc)-7A



Locus for Probe
Xpsr160-4A
Type
RFLP
Synonym
Correct nameXpsr160(Plc)-4A
Chromosome
4A
Chromosome Arm
4AL
Map
Ta-Courtot/CS-GPW-4A100.1
Triticum-AxF-4A112.8
Tturgidum-MxM-4A156.6
Tturgidum-MxM-AFLP-4A149.3
Tturgidum-SSR-4A133.6
[ Show Nearby Loci ]
Map Data
T. turgidum, Messapia x dicoccoides
T. turgidum, Messapia x dicoccoides, AFLP
T. turgidum, Messapia x dicoccoides, SSR
Wheat, Arina x Forno
Wheat, Courtot x Chinese Spring, GPW
Species
Triticum aestivum
Probe
PSR160
Reference
ReferencePaillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160-4D
Type
RFLP
Chromosome
4D
Chromosome Arm
4DL
Map
Triticum-FxO-4DL115
[ Show Nearby Loci ]
Map Data
Wheat, Forno x Oberkulmer
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160-6R
Type
RFLP
Chromosome
6R
Map
Secale-N6xN2-2004-6R0
Secale-N7xN2-2004-6R0
Secale-PxP-2004-6R0
[ Show Nearby Loci ]
Map Data
Rye, N6 x N2, 2004
Rye, N7 x N2, 2004
Rye, P87 x P105, 2004
Species
Secale cereale
Probe
PSR160
Reference
ReferenceKhlestkina EK et al. (2004) Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags Theoretical and Applied Genetics 109:725-732.
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160-7A
Type
RFLP
Synonym
Correct nameXpsr160(Plc)-7A
Chromosome
7A
Chromosome Arm
7AS
Probe
PSR160
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160-7D
Type
RFLP
Synonym
Correct nameXpsr160(Plc)-7D
Chromosome
7D
Chromosome Arm
7DS
Map
Ta-Courtot/CS-GPW-7D0
Triticum-AxF-7D0
Triticum-FxO-7D26
[ Show Nearby Loci ]
In QTL
QLtn.sfr-7D
Map Data
Wheat, Arina x Forno
Wheat, Courtot x Chinese Spring, GPW
Wheat, Forno x Oberkulmer
Species
Triticum aestivum
Probe
PSR160
Reference
ReferencePaillard S et al. (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.) Theoretical and Applied Genetics 107:1235-1242.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160.1
Type
RFLP
Chromosome
4A
Map
Wheat-Composite2004-4A142
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160.1(Plc)-4A
Type
RFLP
Map
CS/SQ1-4A25.6
[ Show Nearby Loci ]
Map Data
Wheat, Chinese Spring x SQ1
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160.2
Type
RFLP
Chromosome
7D
Map
Wheat-Composite2004-7D119
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160.2-7D
Type
RFLP
Map
CS/SQ1-7D1.1
[ Show Nearby Loci ]
Map Data
Wheat, Chinese Spring x SQ1
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]



Locus for Probe
Xpsr160a
Type
RFLP
Chromosome
4A
Map
Wheat-Composite2004-4A130
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
PSR160
Possible Orthologs
PSR160
[ Show all 17 ]