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GrainGenes Marker Report: PSR162

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Locus
PSR162
Type
RFLP
Synonym
Other namepsr162
Chromosome
1H
Map
1D.1R recombinants-39.3
[ Show all 9 ]
[ Show Nearby Loci ]
Rearrangement
In segmentRL-1
Not in segment82-180
WR-4
WR-5
R1
Map Data
Barley, Consensus 2006, DArT
[ Show all 9 ]
2 Point Data
OG09-400/PSR162Distance: 22 cM
PSR162/OG04-600Distance: 3 cM
Species
Avena sativa
Probe
PSR162
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Remark
Number of populations contributing to the placement of PSR162 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs
PSR162a
[ Show all 11 ]



Probe
PSR162
Locus
PSR162
[ Show all 13 ]
Synonym
SynonymHAR35_16343
Remarks
Polymorphism scores are given as the percent polymorphic pairwise comparisons, followed by the number of alleles found and number of varieties tested in parentheses.
Type
cDNA
Sequence
PSR162 Forward
PSR162 Reverse
Copy Number
1
Background
0
Cross hybridizes to
Secale cerealegood
Hordeum vulgaregood
Polymorphism
PSR162 H EcoRI55.6 (2, 10)
[ Show all 17 ]
Gel
PSR162 Gale
Linkage Group
1AL
[ Show all 6 ]
Insert Enzyme
SmaI
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
Source Tissue
Leaf
Insert Size
1.8
Clone Vector
pUC18
Vector Enzyme
SmaI
Excision Enzyme
HindIII
EcoRI
Vector PCR primers
5'-d(GTTTTCCCAGTCACGAC)-3'
5'-d(CAGGAAACAGCTATGAC)-3'
Clone Location
Gale, Michael D.
Clone Authority
Chao, Shiaoman
Data Source
Gale, Michael D.97.09
ATMI92.09



Locus for Probe
psr162
Type
RFLP
Map
Wheat, Yr genes and QTL 1B55.7
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Probe
PSR162
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
psr162-1B
Type
RFLP
Map
Wheat_AB, Kofa x UC1113 1B52
Wheat_AB_2015_Consensus-1B76.7
[ Show Nearby Loci ]
Map Data
Wheat_AB, Kofa x UC1113
Wheat_AB_2015_Consensus
Probe
PSR162
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
PSR162a
Type
RFLP
Chromosome
1H
Map
Barley-consensus-2003-1H62.4
[ Show Nearby Loci ]
Map Data
Barley consensus 2003
Probe
PSR162
Data Source
Langridge, Peter J.
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
PSR162b
Type
RFLP
Chromosome
5H
Map
Barley-consensus-2003-5H27.9
[ Show Nearby Loci ]
Map Data
Barley consensus 2003
Probe
PSR162
Data Source
Langridge, Peter J.
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
Xpr162
Type
RFLP
Chromosome
1H
Map
Hordeum-Giese2-1H103
[ Show Nearby Loci ]
Map Data
Barley, VGxTP
Probe
PSR162



Locus for Probe
Xpsr162
Type
RFLP
Chromosome
1A
1B
1R
Chromosome Arm
1AL
1HL
1RL
Map
Hbulbosum-PB1xPB11-141
[ Show all 12 ]
[ Show Nearby Loci ]
In QTL
Ppd-H2 autumn
Ppd-H2 spring
QGN.BlKy-7H.2
Map Data
Barley, IxT/QTL
[ Show all 11 ]
Probe
PSR162
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
Xpsr162-1
Type
RFLP
Chromosome Arm
1L
Map
Triticeae-Sorrells-188
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
PSR162
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
Xpsr162-1A
Type
RFLP
Chromosome
1A
Chromosome Arm
1AL
Map
Ta-Gale-1A29.9
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR162
Reference
ReferenceSharp PJ et al. (1988) Isolation, characterization and applications of a set of 14 RFLP probes identifying each homoeologous chromosome arm in the Triticeae. Proceedings of the 7th International Wheat Genetics Symposium 639-646.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
Xpsr162-1B
Type
RFLP
Chromosome
1B
Chromosome Arm
1BL
Map
CS/SQ1-1B124.5
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Durum wheat, Kofa x UC1113
[ Show all 6 ]
Species
Triticum aestivum
Probe
PSR162
Reference
ReferenceSharp PJ et al. (1988) Isolation, characterization and applications of a set of 14 RFLP probes identifying each homoeologous chromosome arm in the Triticeae. Proceedings of the 7th International Wheat Genetics Symposium 639-646.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
Xpsr162-1D
Type
RFLP
Chromosome
1D
Chromosome Arm
1DL
Map
Ta-Gale-1D29.9
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR162
Reference
ReferenceSharp PJ et al. (1988) Isolation, characterization and applications of a set of 14 RFLP probes identifying each homoeologous chromosome arm in the Triticeae. Proceedings of the 7th International Wheat Genetics Symposium 639-646.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
Xpsr162-1R
Type
RFLP
Chromosome
1R
Map
Secale-PxP-2004-1R71.5
[ Show Nearby Loci ]
Map Data
Rye, P87 x P105, 2004
Species
Secale cereale
Probe
PSR162
Reference
ReferenceKhlestkina EK et al. (2004) Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags Theoretical and Applied Genetics 109:725-732.
Possible Orthologs
PSR162
[ Show all 11 ]



Locus for Probe
Xpsr162-1U
Type
RFLP
Chromosome
1U
Map
Aeumbellulata-Zhang-1117
[ Show Nearby Loci ]
Map Data
Ae. umbellulata, A x C
Probe
PSR162
Possible Orthologs
PSR162
[ Show all 11 ]