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GrainGenes Marker Report: PSR163

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Locus
PSR163
Type
RFLP
Chromosome
4H
Chromosome Arm
4HL
Map
Barley-Consensus-4H0.4
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 7 ]
Species
Avena sativa
Probe
PSR163
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Remark
Number of populations contributing to the placement of PSR163 in the Barley, Consensus 2006 DArT maps = 1
Possible Orthologs
Xpsr163
Xpsr163-4A
Xpsr163-4B
Xpsr163-4D



Probe
PSR163
Locus
Xpsr163
PSR163
Xpsr163-4A
Xpsr163-4B
Xpsr163-4D
Synonym
SynonymHAR35_47308
Remarks
Polymorphism scores are given as the percent polymorphic pairwise comparisons, followed by the number of alleles found and number of varieties tested in parentheses.
Type
cDNA
Sequence
PSR163
Copy Number
1
Background
0
Cross hybridizes to
Secale cerealegood
Hordeum vulgaregood
Polymorphism
PSR163 H EcoRI0.0 (1, 11)
[ Show all 19 ]
Gel
PSR163 Gale
Linkage Group
4AS
[ Show all 6 ]
Insert Enzyme
SmaI
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
Source Tissue
Leaf
Insert Size
0.5
Clone Vector
pUC18
Vector Enzyme
SmaI
Excision Enzyme
HindIII
EcoRI
Vector PCR primers
5'-d(GTTTTCCCAGTCACGAC)-3'
5'-d(CAGGAAACAGCTATGAC)-3'
Clone Location
Gale, Michael D.
Clone Authority
Chao, Shiaoman
Data Source
Gale, Michael D.97.09
ATMI92.09
Gill, Bikram S.92.09



Locus for Probe
Xpsr163
Type
RFLP
Chromosome
4D
7R
Chromosome Arm
4DL
7RL
Map
Rye-2009-Consensus-7R36.5
[ Show all 6 ]
[ Show Nearby Loci ]
Breakpoint Interval
4DL-1/4DL-3
4L-0.41-0.46
Map Data
Rye, Ds2 x RxL10
Rye, Ds2 x RxL10, RAPD
Rye_2009_consensus
T.tauschii, Appels
Wheat, Physical
Species
Triticum aestivum
Probe
PSR163
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Data Source
Gale, Michael D.93.03
Possible Orthologs
PSR163
Xpsr163-4A
Xpsr163-4B
Xpsr163-4D



Locus for Probe
Xpsr163-4A
Type
RFLP
Synonym
Previous nameXpsr163-4B
ReferenceSharp PJ et al. (1988) Isolation, characterization and applications of a set of 14 RFLP probes identifying each homoeologous chromosome arm in the Triticeae. Proceedings of the 7th International Wheat Genetics Symposium 639-646.
Chromosome
4A
Chromosome Arm
4AS
Map
Ta-Gale-4A-7.8
[ Show Nearby Loci ]
In QTL
QTn.ocs-4A.1
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR163
Reference
ReferenceSharp PJ et al. (1989) The isolation, characterisation and application in the Triticeae of a set of RFLP probes identifying each homoeologous chromosome arm. Theoretical and Applied Genetics 78:342-348.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR163
Xpsr163
Xpsr163-4B
Xpsr163-4D



Locus for Probe
Xpsr163-4B
Type
RFLP
Synonym
Previous nameXpsr163-4A
ReferenceSharp PJ et al. (1988) Isolation, characterization and applications of a set of 14 RFLP probes identifying each homoeologous chromosome arm in the Triticeae. Proceedings of the 7th International Wheat Genetics Symposium 639-646.
Chromosome
4B
Chromosome Arm
4BL
Map
Ta-Gale-4B7.8
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR163
Reference
ReferenceSharp PJ et al. (1989) The isolation, characterisation and application in the Triticeae of a set of RFLP probes identifying each homoeologous chromosome arm. Theoretical and Applied Genetics 78:342-348.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR163
Xpsr163
Xpsr163-4A
Xpsr163-4D



Locus for Probe
Xpsr163-4D
Type
RFLP
Chromosome
4D
Chromosome Arm
4DL
Map
Ta-Gale-4D7.8
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Species
Triticum aestivum
Probe
PSR163
Reference
ReferenceSharp PJ et al. (1989) The isolation, characterisation and application in the Triticeae of a set of RFLP probes identifying each homoeologous chromosome arm. Theoretical and Applied Genetics 78:342-348.
Data Source
Gale, Michael D.97.10
Possible Orthologs
PSR163
Xpsr163
Xpsr163-4A
Xpsr163-4B