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GrainGenes Marker Report: Rrn5S1

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Locus
Rrn5S1
Type
RFLP
Synonym
SynonymRrn5S1
Chromosome
2H
Chromosome Arm
2HL
Map
Barley-Consensus-2H18.6
[ Show all 13 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QSss.StMo-2H.2
Map Data
Barley consensus
[ Show all 13 ]
Probe
Rrn5S1
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
Rrn5S2



Probe
Rrn5S1
Locus
Rrn5S1
Rrn5S1-2H
Reference
ReferenceKolchinsky A et al. (1991) "Portraying" of plant genomes using polymerase chain reaction amplification of ribosomal 5S genes. Genome 34:1028-1031.
Type
STS
PCR primers
L 5'-TTT AGT GCT GGT ATG ATC GC-3'
R 5'-TGG GAA GTC CTC GTG TTG CA-3'
Linkage Group
2
Source Gene Class
5S ribosomal RNA
Source Species
Hordeum vulgare
Clone Location
Kleinhofs, Andris
Clone Authority
Kleinhofs, Andris
Ananiev, Evgenii
Data Source
Kleinhofs, Andris92.09
Kleinhofs, Andris96.05.08



Locus for Probe
Rrn5S1-2H
Map
Hv-SxM-Stein-2H82.28
[ Show Nearby Loci ]
Map Data
Barley, SxM, Stein2006
Probe
Rrn5S1