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GrainGenes Marker Report: WG380B

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Locus
WG380B
Type
RFLP
Synonym
Synonymlks2 (Hordeum)
Chromosome
7H
Map
Barley-Consensus2-7H100.5
[ Show all 13 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 13 ]
Species
Hordeum vulgare
Probe
WG380
Associated Gene
lks2 (Hordeum)
Gene Class
Short awned
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceCosta JM et al. (2001) Molecular mapping of the Oregon Wolfe Barleys: a phenotypically polymorphic doubled-haploid population Theoretical and Applied Genetics 103:415-424.
Data Source
Kleinhofs, Andris
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Oregon Wolfe Dom x Rec
Possible Orthologs
WG380
[ Show all 9 ]



Probe for Locus
WG380
Locus
WG380A
[ Show all 11 ]
Type
Genomic
Polymorphism
WG380 XbaI
WG380 EcoRI
WG380 EcoRV
WG380 HindIII
Linkage Group
[b 1H, 1LH]
Insert Enzyme
PstI
Source Species
Triticum aestivum
Source Germplasm
Chinese Spring
Insert Size
1.6
Clone Vector
pGem-4
Excision Enzyme
PstI
Clone Location
GrainGenes Probe Repository
Sorrells, Mark E.
Image
WG380 SO autoradiogram
Data Source
ATMI92.09
Gill, Bikram S.92.09



Gene Associated with Locus
lks2 (Hordeum)
Full Name
Short awn 2
Synonym
Synonymlk2
Lk2 (Hordeum)
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..
Gene Class
Short awned
Allele
Lks2 (Hordeum)
lks2 (Hordeum)
Locus
lks2
WG380B
URL
http://ace.untamo.net/cgi-bin/ace/tree/default?class=Gene&name=lks2+(Hordeum)
Chromosome
7H
Image
Barley, kap/Lks2 phenotype
Barley, Kap/Lks2 phenotype
Barley, kap/lks2 phenotype
Barley, Kap/lks2 phenotype
PCR of Hvknox3 in the OWBs
BGS Photo
BGS10b, Short awn 2  [ BGS Database ]
Data Source
Franckowiak, Jerome D.96.10