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GrainGenes Marker Report: WG420

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Locus
WG420
Type
RFLP
Synonym
SynonymWG420
Xwg420
Chromosome
7H
Chromosome Arm
7HL
Map
Barley-consensus-2003-7H149.7
[ Show all 19 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QPg.PrNu-7H.2
QSgw.BlKy-7H.3
Map Data
Barley consensus
[ Show all 19 ]
Probe
WG420
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Langridge, Peter J.
Remark
Number of populations contributing to the placement of WG420 in the Barley, Consensus 2006 DArT maps = 2
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
wg420a
[ Show all 9 ]



Probe
WG420
Locus
Lr19
[ Show all 13 ]
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
Type
Genomic
Sequence
CN180784
Polymorphism
WG420 EcoRV
WG420 EcoRI
WG420 HindIII
WG420 XbaI
Linkage Group
[b 1L]
Insert Enzyme
PstI
Source Species
Triticum aestivum
Insert Size
1
Clone Vector
pGem-4
pGEM4
Excision Enzyme
PstI
Clone Location
GrainGenes Probe Repository
Sorrells, Mark E.
Image
WG420 KO autoradiogram
WG420 SO autoradiogram
Data Source
ATMI92.09



Locus for Probe
WG420A
Type
RFLP
Map
Oat-2009-KxO_1736
Oat-2016-Consensus-285.2
Oat-2018-Consensus_Mrg0285.2
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Avena sativa L.
Probe
WG420
Possible Orthologs
WG420
[ Show all 9 ]



Locus for Probe
WG420B
Type
RFLP
Map
Oat-2001-KxM-QTL_7-280
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Oat-2001-KxM-QTL
[ Show all 6 ]
Species
Avena sativa
Probe
WG420
Possible Orthologs
WG420
[ Show all 9 ]



Locus for Probe
Gb7
Type
Trait
Chromosome
7D
Chromosome Arm
7DL
Map
Wheat-Composite2004-7D195
[ Show Nearby Loci ]
Species
Triticum aestivum
Probe
WG420
Associated Gene
Gb7 (Triticum)
Gene Class
Reaction to Schizaphis graminum Rond. (Toxoptera graminum Rond.)
Reference
ReferenceWeng Y et al. (2005) Microsatellite markers associated with two-derived greenbug resistance loci in wheat Theoretical and Applied Genetics 110:462-469.
Remark
Trait marker Xwg420-7D
Nearby marker on Composite map: Xwg420
Position on Composite map estimated by GrainGenes.



Locus for Probe
Lr19
Type
Gene
Trait
Chromosome
7B
7D
Chromosome Arm
7BL
7DL
Map
Wheat-Composite2004-7B105
[ Show Nearby Loci ]
2 Point Data
Lr19/cn-D1#1
Lr19/Xcdo775
Species
Triticum aestivum
Probe
STSLr19-130
WG420
Associated Gene
Lr19 (Triticum)
Gene Class
Reaction to Puccinia recondita Rob. ex Desm.
Reference
ReferenceZhang W et al. (2005) Molecular characterization of durum and common wheat recombinant lines carrying leaf rust resistance (Lr19) and yellow pigment (Y) genes from Lophopyrum ponticum Theoretical and Applied Genetics 111:573-582.
ReferencePrins R et al. (2001) AFLP and STS tagging of Lr19, a gene conferring resistance to leaf rust in wheat Theoretical and Applied Genetics 103:618-624.
Data Source
Matthews, David E.
Remark
Trait marker Xwg420-7B
Nearby marker on Composite map: Xwg420
Position on Composite map estimated by GrainGenes.
Possible Orthologs
Lr19^A^



Locus for Probe
Sr25
Type
Gene
Trait
Chromosome
7B
Chromosome Arm
7BL
Map
Wheat-2014-Consensus-Ug99-Update_7D110
Wheat-Composite2004-7B105
[ Show Nearby Loci ]
Map Data
Wheat-2014-Consensus-Ug99-Update
2 Point Data
Sr25/cn-D1#1
Species
Triticum aestivum
Probe
BF145935
[ Show all 6 ]
Associated Gene
Sr25 (Triticum)
Gene Class
Reaction to Puccinia graminis Pers.
Reference
ReferenceYu L et al. (2014) A consensus map for Ug99 stem rust resistance loci in wheat. Theoretical and Applied Genetics 127:1561-1581.
ReferenceLiu S et al. (2010) Diagnostic and co-dominant PCR markers for wheat stem rust resistance genes Sr25 and Sr26 Theoretical and Applied Genetics 120:691-697.
ReferencePrins R et al. (2001) AFLP and STS tagging of Lr19, a gene conferring resistance to leaf rust in wheat Theoretical and Applied Genetics 103:618-624.
ReferenceMcIntosh RA et al. (1977) Inheritance of leaf rust and stem rust resistances in wheat cultivars Agent and Agatha. Australian Journal of Agricultural Research 28:37-45.
ReferenceYu LX et al. MAS Wheat. Bringing Genomics to the Wheat Fields. Disease resistance. Stem Rust Resistance. Sr25 MAS Wheat. Marker Assisted Selection in Wheat.
Data Source
Matthews, David E.
Remark
Trait marker Lr19
Nearby marker on Composite map: Lr19, Xwg420
Position on Composite map estimated by GrainGenes.
The location on the 2014 Ug99 Consensus Map is approximate.
Possible Orthologs
Sr25^A^



Locus for Probe
wg420a
Type
RFLP
Map
Oat-2004-P48xP38_12
Oat-KxO/2003-176.62
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2004-P48xP38
Species
Avena sativa
Probe
WG420
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
Remark
Marker placement value = 1.64 cM on map Oat-KxO/2003-17
Marker is not a framework marker on map Oat-KxO/2003-17
Possible Orthologs
WG420
[ Show all 9 ]



Locus for Probe
wg420b
Type
RFLP
Map
Oat-2001-KxM_7-280
Oat-KxO/2003-7_10_2879.3
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2001-KxM
Probe
WG420
Remark
Marker placement value = 3.45 cM on map Oat-KxO/2003-7_10_28
Marker is not a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs
WG420
[ Show all 9 ]



Locus for Probe
Xcnl.WG420
Type
RFLP
Chromosome
7H
Map
Hordeum-Heun-7H224.5
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
WG420
Possible Orthologs
WG420
[ Show all 9 ]



Locus for Probe
Xwg420
Type
RFLP
Synonym
SynonymWG420
Chromosome
7B
7D
Map
Avena-Sorrells-D83.7
Tm-Dubcovsky2-7A45.7
Wheat-Composite2004-7B101
Wheat-Composite2004-7D193
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
T. monococcum, DV92 x G3116
Wheat, Composite, 2004
Probe
WG420
Possible Orthologs
WG420
[ Show all 9 ]



Locus for Probe
Xwg420-7D
Type
RFLP
Chromosome
7D
Chromosome Arm
7DL
Map
Ta-Synthetic/Opata-7D141.3
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
[ Show all 6 ]
Probe
WG420
Possible Orthologs
WG420
[ Show all 9 ]



Locus for Probe
Xwg420A
Type
RFLP
Chromosome Arm
7HL
Map
Hbulbosum-PB1xPB11-749
Oat-KxO-1715.2
[ Show Nearby Loci ]
Map Data
H. bulbosum, PB1 x PB11
Oat, KxO
Probe
WG420
Image
WG420 KO autoradiogram
Possible Orthologs
WG420
[ Show all 9 ]



Locus for Probe
Xwg420B
Type
RFLP
Chromosome Arm
7HL
Map
Hbulbosum-PB1xPB11-767
Oat-2001-KxM-QTL_7-280
Oat-2001-KxO-QTL_7-10-2865
Oat-2001-KxO_7-10-2865
Oat-KxO-722
[ Show Nearby Loci ]
Map Data
H. bulbosum, PB1 x PB11
Oat, KxO
Oat-2001-KxM-QTL
Oat-2001-KxO
Oat-2001-KxO-QTL
Probe
WG420
Image
WG420 KO autoradiogram
Possible Orthologs
WG420
[ Show all 9 ]

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