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GrainGenes Marker Report: WMC500

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Locus
wmc500
Type
microsatellite
Map
Durum Wheat, NSGC Lr 3B27.1
[ Show all 10 ]
[ Show Nearby Loci ]
Map Data
3B Physical
Durum Wheat, NSGC Lr
Wheat AB, Carotenoid QTL, 2017
Wheat, Yr genes and QTL
Probe
WMC500
Possible Orthologs
Xwmc500-1B.1
[ Show all 26 ]



Probe
WMC500
Locus
Xwmc500-3B
[ Show all 28 ]
Reference
ReferenceSomers DJ and Isaac P (2004) SSRs from the Wheat Microsatellite Consortium.
Remarks
Wheat Microsatellite Consortium Project 1, Plate reference 25b12
Donor: Serasem
Location from nullisomic/tetrasomic (Daryl Somers, AgCanada, Feb 2001) : 155 bases located on 2B, 165 bases located on 7B, 180 bases located on 1B, 188 bases located on 3B, 204 bases located on 4A
Trimmed to insert at both ends. (CA)13 38 to 63, (CA)10 66 to 85.
Type
PCR
SSR
PCR primers
Forward ATAgcATgTTggAAcAgAgcAc at 15 length 22 bases, Tm 61
Reverse cTTAgATgcAAcTcTATgcggT at 178 length 22 bases, Tm 60
SSR size
185 bases expected, Chinese Spring
Amplification Conditions
51C anneal, polymorphic on acrylamide (polymorphism is superimposed on smear, 150-190 bases, complex).
Sequence
WMC500
Source Species
Triticum aestivum
Data Source
Somers, Daryl J.2004.06
Isaac, Peter G.2004.06



Locus for Probe
wmc500-1B
Type
Microsatellite
In QTL
QHt.IDuWUE-1B.1
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500-1B.1
Type
Microsatellite
Chromosome
1B
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500-1B.2
Type
Microsatellite
Chromosome
1B
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500-2B
Type
Microsatellite
Chromosome
2B
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500-5B
Type
Microsatellite
Chromosome
5B
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500-7B
Type
Microsatellite
Chromosome
7B
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500a-1B
Type
Microsatellite
Map
Wheat_AB, Colosseo x Lloyd 1B14.2
Wheat_AB, Kofa x Svevo 1B28.1
Wheat_AB_2015_Consensus-1B23.2
[ Show Nearby Loci ]
Map Data
Wheat_AB, Colosseo x Lloyd
Wheat_AB, Kofa x Svevo
Wheat_AB_2015_Consensus
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500b-1B
Type
Microsatellite
Map
Wheat_AB, Colosseo x Lloyd 1B29.9
Wheat_AB, Simeto x Levante 1B_129.5
Wheat_AB_2015_Consensus-1B44.1
[ Show Nearby Loci ]
Map Data
Wheat_AB, Colosseo x Lloyd
Wheat_AB, Simeto x Levante
Wheat_AB_2015_Consensus
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500-3B
Type
Microsatellite
Map
Wheat_AB, Colosseo x Lloyd 3B21.6
Wheat_AB_2015_Consensus-3B27.1
[ Show Nearby Loci ]
Map Data
Wheat_AB, Colosseo x Lloyd
Wheat_AB_2015_Consensus
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500-4A
Type
Microsatellite
Map
Wheat_AB, Colosseo x Lloyd 4A_257.2
Wheat_AB_2015_Consensus-4A154
[ Show Nearby Loci ]
Map Data
Wheat_AB, Colosseo x Lloyd
Wheat_AB_2015_Consensus
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500a
Type
Microsatellite
Map
Wheat, Yr genes and QTL 1B28
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
wmc500b
Type
Microsatellite
Map
Wheat, Yr genes and QTL 1B40.1
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Stb14
Type
Trait
Chromosome
3B
Chromosome Arm
3BS
Map
Wheat-Composite2004-3B22
[ Show Nearby Loci ]
Species
Triticum aestivum
Probe
WMC500
Associated Gene
Stb14 (Triticum)
Gene Class
Reaction to Mycosphaerella graminicola (Fuckel) Schroeter
Data Source
Wheat Gene Catalogue
Remark
Trait marker Xwmc500-3B
Nearby marker on Composite map: Xwmc500b
Position on Composite map estimated by GrainGenes.



Locus for Probe
Xwmc500-1B.1
Type
Microsatellite
Chromosome
1B
Map
Ta-SSR-2004-1B23.5
[ Show Nearby Loci ]
Map Data
Wheat, Consensus SSR, 2004
Probe
WMC500
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500-1B.2
Type
Microsatellite
Chromosome
1B
Map
Ta-SSR-2004-1B29.2
[ Show Nearby Loci ]
Map Data
Wheat, Consensus SSR, 2004
Probe
WMC500
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500-2B
Type
Microsatellite
Chromosome
2B
Map
Ta-SSR-2004-2B77.6
[ Show Nearby Loci ]
Map Data
Wheat, Consensus SSR, 2004
Probe
WMC500
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500-3B
Type
Microsatellite
Chromosome
3B
Map
Louise/Penawawa-3B23.6
Ta-SSR-2004-3B32.3
[ Show Nearby Loci ]
Map Data
Wheat, Consensus SSR, 2004
Wheat, Louise x Penawawa
Probe
WMC500
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500-4A
Type
Microsatellite
Chromosome
4A
Map
Ta-SSR-2004-4A67.4
[ Show Nearby Loci ]
Map Data
Wheat, Consensus SSR, 2004
Probe
WMC500
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500-5B
Type
Microsatellite
Chromosome
5B
Map
Ta-SSR-2004-5B126.1
[ Show Nearby Loci ]
Map Data
Wheat, Consensus SSR, 2004
Probe
WMC500
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500-7B
Type
Microsatellite
Chromosome
7B
Map
Ta-SSR-2004-7B147.8
[ Show Nearby Loci ]
Map Data
Wheat, Consensus SSR, 2004
Probe
WMC500
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500a
Type
Microsatellite
Chromosome
4A
Map
Svevo/Ciccio-4A105.2
Wheat-Composite2004-4A125
[ Show Nearby Loci ]
Map Data
Durum wheat, Svevo x Ciccio
Wheat, Composite, 2004
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500a-4A
Type
Microsatellite
Map Data
Durum wheat, Svevo x Ciccio
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500b
Type
Microsatellite
Chromosome
3B
Map
Svevo/Ciccio-7B172.2
Wheat-Composite2004-3B20
[ Show Nearby Loci ]
Breakpoint Interval
7BL10-0.78-1.00
Map Data
Durum wheat, Svevo x Ciccio
Wheat, Composite, 2004
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500b-7B
Type
Microsatellite
Map Data
Durum wheat, Svevo x Ciccio
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500c
Type
Microsatellite
Chromosome
1B
Map
Svevo/Ciccio-1B23.6
Wheat-Composite2004-1B28
[ Show Nearby Loci ]
Breakpoint Interval
1BS.sat-0.31
Map Data
Durum wheat, Svevo x Ciccio
Wheat, Composite, 2004
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500c-1B
Type
Microsatellite
Map Data
Durum wheat, Svevo x Ciccio
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]



Locus for Probe
Xwmc500g
Type
Microsatellite
Chromosome
5B
Map
Wheat-Composite2004-5B110
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
WMC500
Possible Orthologs
wmc500
[ Show all 26 ]