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GrainGenes Marker Report: WMC553

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Locus
wmc553
Type
microsatellite
Map
Durum Wheat, NSGC Lr 6A90.3
Wheat, Yr genes and QTL 6A49.6
Wheat_AB_2017_Carotenoid_QTL-6A90.3
[ Show Nearby Loci ]
QTL with Locus Marker
QHt.IDuWUE-6A.1
Map Data
Durum Wheat, NSGC Lr
Wheat AB, Carotenoid QTL, 2017
Wheat, Yr genes and QTL
Probe
WMC553
Possible Orthologs
Xwmc553-6A
wmc553-6A



Probe
WMC553
Locus
Xwmc553-6A
wmc553
wmc553-6A
Reference
ReferenceSomers DJ and Isaac P (2004) SSRs from the Wheat Microsatellite Consortium.
Remarks
Wheat Microsatellite Consortium Project 1, Plate reference 26f10
Donor: Momont
Trimmed to Ssp1 at 5' end and to insert at 3' end. Bases 402 to 489 show homology to 4f12 bases 162 to 249 (88 in longest run, maxScore = 114), reverse primer has 2 mismatches to 4f12, no obvious math for forward primer. (CA)24 441 to 488.
Type
PCR
SSR
PCR primers
Forward cggAgcATgcAgcTAgTAA at 212 length 19 bases, Tm 60
Reverse cgccTgcAgAATTcAAcAc at 549 length 19 bases, Tm 62
SSR size
356 bases expected, Chinese Spring
Sequence
WMC553
Source Species
Triticum aestivum
Data Source
Somers, Daryl J.2004.06
Isaac, Peter G.2004.06



Locus for Probe
wmc553-6A
Type
Microsatellite
Map
Wheat_AB, Kofa x UC1113 6A30.7
Wheat_AB, Meridiano x Claudio 6A_249.3
Wheat_AB_2015_Consensus-6A90.3
[ Show Nearby Loci ]
Map Data
Wheat_AB, Kofa x UC1113
Wheat_AB, Meridiano x Claudio
Wheat_AB_2015_Consensus
Probe
WMC553
Possible Orthologs
wmc553
Xwmc553-6A



Locus for Probe
Xwmc553-6A
Type
Microsatellite
Chromosome
6A
Map
Kofa/UC1113-6A67.1
Ta-SSR-2004-6A52
[ Show Nearby Loci ]
Map Data
Durum wheat, Kofa x UC1113
Wheat, Consensus SSR, 2004
Probe
WMC553
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc553
wmc553-6A