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GrainGenes Marker Report: WMC559

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Probe
WMC559
Locus
Xwmc559-3A
Sr35
wmc559
Reference
ReferenceSomers DJ and Isaac P (2004) SSRs from the Wheat Microsatellite Consortium.
Remarks
Wheat Microsatellite Consortium Project 1, Plate reference 10c3
Donor: Gale, John Innes
Sequence receive 14.9.99. No (apparent) overlap between forward and reverse sequences. Trimmed to insert at 3' end, 5' end not located. (GT)16 136 to 167, (GT)14 172 to 199, (GT)10 259 to 278. Size of amplified fragment is an estimation.
Type
PCR
SSR
PCR primers
Forward AcAccAcgAATgATgTgccA at 71 length 20 bases, Tm 65
Reverse AcgAcgccATgTATgcAgAA at 389 length 20 bases, Tm 64
SSR size
338 bases expected, Chinese Spring
Amplification Conditions
61C anneal, product.
Sequence
WMC559
Source Species
Triticum aestivum
Data Source
Somers, Daryl J.2004.06
Isaac, Peter G.2004.06



Locus for Probe
wmc559
Type
Microsatellite
Map
Wheat, Yr genes and QTL 3A68.7
Wheat_Yr76_2016-3A100.9
Wheat_Yr_2021-3A148.52
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Wheat, Yr Update, 2021
Wheat_Yr76_2016
Probe
WMC559
Possible Orthologs
Xwmc559-3A



Locus for Probe
Sr35
Type
Gene
Chromosome
3A
Chromosome Arm
3AL
Map
Triticum-Genes-3A40
Wheat-2014-Consensus-Ug99-Update_3A114
[ Show Nearby Loci ]
Map Data
Wheat genes
Wheat-2014-Consensus-Ug99-Update
2 Point Data
Centromere/Sr35#1
Sr35/R2#1
Probe
AK335187
[ Show all 9 ]
Associated Gene
Sr35 (Triticum)
Gene Class
Reaction to Puccinia graminis Pers.
Reference
ReferenceYu L et al. (2014) A consensus map for Ug99 stem rust resistance loci in wheat. Theoretical and Applied Genetics 127:1561-1581.
ReferenceSaintenac C et al. (2013) Identification of Wheat Gene Sr35 That Confers Resistance to Ug99 Stem Rust Race Group Science 341:783-786.
ReferenceZhang W et al. (2010) Genetic Maps of Stem Rust Resistance Gene Sr35 in Diploid and Hexaploid Wheat Crop Science 50:2464-2474.
ReferenceMcIntosh RA et al. (1984) Cytogenetical studies in wheat. XIII. Sr35 - a third gene from Triticum monococcum for resistance to Puccinia graminis tritici. Zeitschrift fur Pflanzenzuchtung 92:1-14.
ReferenceZhang W et al. MAS Wheat. Bringing Genomics to the Wheat Fields. Disease resistance. Stem Rust Resistance. Sr35 MAS Wheat. Marker Assisted Selection in Wheat.
Remark
The location on the 2014 Ug99 Consensus Map is approximate.



Locus for Probe
Xwmc559-3A
Type
Microsatellite
Chromosome
3A
Map
Louise/Penawawa-3A81.1
Ta-SSR-2004-3A83.3
Wheat_Yr76_2016-3A100.9
[ Show Nearby Loci ]
In QTL
Qgc.hwwgr-3A
QPhs.hwwgr-3AL
Map Data
Wheat, Consensus SSR, 2004
Wheat, Louise x Penawawa
Wheat_Yr76_2016
Probe
WMC559
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc559

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