Query (optional)   in Class  

GrainGenes Marker Report: WMC580

[ Submit comment/correction ]

Probe
WMC580
Locus
Xwmc580-6A
Sr13
wmc580
Reference
ReferenceSomers DJ and Isaac P (2004) SSRs from the Wheat Microsatellite Consortium.
Remarks
Wheat Microsatellite Consortium Project 1, Plate reference 15h3.1
Donor: Aventis
Multiple inserts in this clone, this is the first insert. Trimmed to Rsa1 at both ends of insert. (CA)23 389 to 434 plus numerous small CA repeats.
Type
PCR
SSR
PCR primers
Forward AAggcgcAcAAcAcAATgac at 178 length 20 bases, Tm 64
Reverse ggTcTTTTgTgcAgTgAActgaag at 483 length 24 bases, Tm 64
SSR size
329 bases expected, Chinese Spring
Sequence
WMC580
Source Species
Triticum aestivum
Data Source
Somers, Daryl J.2004.06
Isaac, Peter G.2004.06



Locus for Probe
wmc580
Type
Microsatellite
Map
Wheat, Yr genes and QTL 6A71.5
[ Show Nearby Loci ]
In QTL
QNdvi.KoxSv-6A
Map Data
Wheat, Yr genes and QTL
Probe
WMC580
Possible Orthologs
Xwmc580-6A



Locus for Probe
Sr13
Type
Gene
Chromosome
6A
Chromosome Arm
6AL
Map
Triticum-Genes-6A55.3
Wheat-2014-Consensus-Ug99-Update_6A160
[ Show Nearby Loci ]
Map Data
Wheat genes
Wheat-2014-Consensus-Ug99-Update
2 Point Data
Centromere/Sr13#1
Sr8/Sr13#1
Species
Triticum turgidum
Probe
BARC104b
[ Show all 7 ]
Associated Gene
Sr13 (Triticum)
Gene Class
Reaction to Puccinia graminis Pers.
Reference
ReferenceYu L et al. (2014) A consensus map for Ug99 stem rust resistance loci in wheat. Theoretical and Applied Genetics 127:1561-1581.
ReferenceSimons K et al. (2010) Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum ssp. durum L.) Theoretical and Applied Genetics 122:649-658.
ReferenceMcIntosh RA (1972) Cytogenetical studies in wheat VI. Chromosome location and linkage studies involving Sr13 and Sr8 for reaction to Puccinia graminis f.sp. tritici. Australian Journal of Biological Sciences 25:765-773.
ReferenceZhang W and Dubcovsky J MAS Wheat. Bringing Genomics to the Wheat Fields. Disease resistance. Stem Rust Resistance. Sr13 MAS Wheat. Marker Assisted Selection in Wheat.
Remark
The location on the 2014 Ug99 Consensus Map is approximate.



Locus for Probe
Xwmc580-6A
Type
Microsatellite
Chromosome
6A
Map
Kofa/UC1113-6A101.7
Ta-SSR-2004-6A91
[ Show Nearby Loci ]
Map Data
Durum wheat, Kofa x UC1113
Wheat, Consensus SSR, 2004
Probe
WMC580
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
wmc580

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.