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GrainGenes Marker Report: Xbcd1092

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Locus
Xbcd1092
Type
RFLP
Chromosome
4D
7R
Chromosome Arm
4DL
7RS
Map
Rye-2009-Consensus-7R8.2
Secale-UxE-714.1
Ta-Physical-Gill-4ABD44
Ta-Physical-Gill-4D2.73
Tm-Dubcovsky2-4A0.7
[ Show Nearby Loci ]
Breakpoint Interval
4DL-1/4DL-3
4L-0.41-0.46
Map Data
Rye, UC90 x E-line
Rye_2009_consensus
T. monococcum, DV92 x G3116
Wheat, Physical
Species
Triticum aestivum
Probe
BCD1092
Homology
AF184146_1e-value: 0.008(AF184146) ARF GAP-like zinc finger-containing protein ZIGA2 [Arabidopsis thaliana]
T45911e-value: 1e-19hypothetical protein F5K20.10 - Arabidopsis thaliana
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus and Xbcd734 were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous. Segregation data are listed under Segregation data are listed under Xucd102(Esi13).
Possible Orthologs
BCD1092



Probe for Locus
BCD1092
Locus
Xbcd1092
BCD1092
Synonym
SynonymHAR35_34035
HAR35_459
HAR35_510
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Type
cDNA
Sequence
BE439002
BE439029
BCD1092_WHE05B12.s1
Linkage Group
4L
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
0.9
PCR size
0.9
Clone Vector
pBluSK
pBluSK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Data Source
Sorrells, Mark E.96.07
ATMI92.09