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GrainGenes Marker Report: Xbcd342A

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Locus
Xbcd342A
Type
RFLP
Chromosome
6B
Map
Oat-2001-KxO_210
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Oat, KxO
[ Show all 6 ]
Probe
BCD342
Homology
AAA96773.1e-value: 0.20(U51461) IgG anti-nucleosome heavy chain variable region [Mus musculus]
BAA90635.1e-value: 2e-21(AP001129) EST D23066(C2127) corresponds to a region of the predicted gene.; hypothetical protein [Oryza sativa]
Image
BCD342 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
BCD342
[ Show all 16 ]



Probe for Locus
BCD342
Locus
Xbcd342-6D
[ Show all 21 ]
Synonym
SynonymHAR35_2877
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Bar.LambZAPII
Type
cDNA
Sequence
BE438801
[ Show all 6 ]
Polymorphism
BCD342 EcoRI
Durums BCD342 EcoRI
Linkage Group
6S
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
1.2
PCR size
1.2
Clone Vector
pBluSK
pBluSK-
BS-SK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD342 BROWS autoradiogram
BCD342 KO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09

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